Analysis of interatomic Contacts of Structural Units in PDB entry:
1OYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OYG entry

There is 1 chain in PDB entry 1OYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 34LYS 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1OYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 53Right-handed alpha
Helix 2
2
A
53 58Right-handed alpha
Helix 3
3
A
59 64Right-handed 310
Helix 4
4
A
69 73Right-handed 310
Helix 5
5
A
76 80Right-handed 310
Helix 6
6
A
132 136Right-handed 310
Helix 7
7
A
146 151Right-handed alpha
Helix 8
8
A
155 159Right-handed 310
Helix 9
9
A
227 235Right-handed alpha
Helix 10
10
A
236 240Right-handed 310
Helix 11
11
A
273 283Right-handed 310
Helix 12
12
A
286 300Right-handed alpha
Helix 13
13
A
302 309Right-handed alpha
Helix 14
14
A
362 364Right-handed 310
Helix 15
15
A
392 394Right-handed 310
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There are 6 sheets in PDB entry 1OYG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
324 333parallel
Strand 3
A
311 318anti-parallel
Strand 4
A
256 264anti-parallel
Strand 5
A
246 253anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 141first strand
Strand 2
A
120 127anti-parallel
Strand 3
A
103 111anti-parallel
Strand 4
A
83 91anti-parallel
Strand 5
A
161 169parallel
Strand 6
A
175 183anti-parallel
Strand 7
A
189 201anti-parallel
Strand 8
A
206 218anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 349first strand
Strand 2
A
352 360anti-parallel
Strand 3
A
374 381anti-parallel
Strand 4
A
389 390anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 349first strand
Strand 2
A
352 360anti-parallel
Strand 3
A
374 381anti-parallel
Strand 4
A
396 400anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 416first strand
Strand 2
A
423 430anti-parallel
Strand 3
A
442 443anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 416first strand
Strand 2
A
423 430anti-parallel
Strand 3
A
447 452anti-parallel
Strand 4
A
455 458anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il