Analysis of interatomic Contacts of Structural Units in PDB entry:
1OYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OYJ entry

There are 4 chains in PDB entry 1OYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 230
B
 GLU 3LYS 227
C
 GLU 3GLY 229
D
 GLU 3LYS 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 1OYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 29Right-handed alpha
Helix 2
2
A
43 50Right-handed alpha
Helix 3
3
A
68 80Right-handed alpha
Helix 4
4
A
96 125Right-handed alpha
Helix 5
5
A
126 149Right-handed alpha
Helix 6
6
A
163 170Right-handed alpha
Helix 7
7
A
171 174Right-handed 310
Helix 8
8
A
175 184Right-handed alpha
Helix 9
9
A
186 191Right-handed alpha
Helix 10
10
A
191 202Right-handed alpha
Helix 11
11
A
204 211Right-handed alpha
Helix 12
12
A
213 230Right-handed alpha
Helix 13
13
B
15 29Right-handed alpha
Helix 14
14
B
43 50Right-handed alpha
Helix 15
15
B
68 80Right-handed alpha
Helix 16
16
B
96 125Right-handed alpha
Helix 17
17
B
127 149Right-handed alpha
Helix 18
18
B
163 174Right-handed alpha
Helix 19
19
B
175 184Right-handed alpha
Helix 20
20
B
186 191Right-handed alpha
Helix 21
21
B
191 202Right-handed alpha
Helix 22
22
B
204 211Right-handed alpha
Helix 23
23
B
213 227Right-handed alpha
Helix 24
24
C
15 28Right-handed alpha
Helix 25
25
C
43 50Right-handed alpha
Helix 26
26
C
68 79Right-handed alpha
Helix 27
27
C
96 125Right-handed alpha
Helix 28
28
C
126 149Right-handed alpha
Helix 29
29
C
163 170Right-handed alpha
Helix 30
30
C
171 174Right-handed 310
Helix 31
31
C
175 184Right-handed alpha
Helix 32
32
C
186 191Right-handed alpha
Helix 33
33
C
191 202Right-handed alpha
Helix 34
34
C
204 211Right-handed alpha
Helix 35
35
C
213 229Right-handed alpha
Helix 36
36
D
15 29Right-handed alpha
Helix 37
37
D
43 50Right-handed alpha
Helix 38
38
D
68 80Right-handed alpha
Helix 39
39
D
96 121Right-handed alpha
Helix 40
40
D
126 149Right-handed alpha
Helix 41
41
D
163 170Right-handed alpha
Helix 42
42
D
171 174Right-handed 310
Helix 43
43
D
175 184Right-handed alpha
Helix 44
44
D
186 191Right-handed alpha
Helix 45
45
D
191 202Right-handed alpha
Helix 46
46
D
204 211Right-handed alpha
Helix 47
47
D
213 224Right-handed alpha
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There are 4 sheets in PDB entry 1OYJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
7 11parallel
Strand 3
A
58 61anti-parallel
Strand 4
A
64 67anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
7 11parallel
Strand 3
B
58 61anti-parallel
Strand 4
B
64 67anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 36first strand
Strand 2
C
7 11parallel
Strand 3
C
58 61anti-parallel
Strand 4
C
64 67anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 36first strand
Strand 2
D
7 11parallel
Strand 3
D
58 61anti-parallel
Strand 4
D
64 67anti-parallel
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