Analysis of interatomic Contacts of Structural Units in PDB entry:
1OYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OYP entry

There are 6 chains in PDB entry 1OYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 243
B
 MET 1GLU 243
C
 MET 1GLU 243
D
 MET 1GLU 243
E
 MET 1GLU 243
F
 MET 1GLU 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1OYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 100Right-handed alpha
Helix 2
2
A
103 108Right-handed alpha
Helix 3
3
A
124 147Right-handed alpha
Helix 4
4
A
177 184Right-handed alpha
Helix 5
5
A
211 238Right-handed alpha
Helix 6
6
A
239 241Right-handed 310
Helix 7
7
B
84 100Right-handed alpha
Helix 8
8
B
103 108Right-handed alpha
Helix 9
9
B
124 147Right-handed alpha
Helix 10
10
B
177 184Right-handed alpha
Helix 11
11
B
211 238Right-handed alpha
Helix 12
12
B
239 241Right-handed 310
Helix 13
13
C
84 100Right-handed alpha
Helix 14
14
C
103 108Right-handed alpha
Helix 15
15
C
124 147Right-handed alpha
Helix 16
16
C
177 184Right-handed alpha
Helix 17
17
C
211 238Right-handed alpha
Helix 18
18
C
239 241Right-handed 310
Helix 19
19
D
84 100Right-handed alpha
Helix 20
20
D
103 108Right-handed alpha
Helix 21
21
D
124 147Right-handed alpha
Helix 22
22
D
177 184Right-handed alpha
Helix 23
23
D
211 238Right-handed alpha
Helix 24
24
D
239 241Right-handed 310
Helix 25
25
E
84 100Right-handed alpha
Helix 26
26
E
103 108Right-handed alpha
Helix 27
27
E
124 147Right-handed alpha
Helix 28
28
E
177 184Right-handed alpha
Helix 29
29
E
211 238Right-handed alpha
Helix 30
30
E
239 241Right-handed 310
Helix 31
31
F
84 100Right-handed alpha
Helix 32
32
F
103 108Right-handed alpha
Helix 33
33
F
124 147Right-handed alpha
Helix 34
34
F
177 184Right-handed alpha
Helix 35
35
F
211 238Right-handed alpha
Helix 36
36
F
239 241Right-handed 310
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There are 9 sheets in PDB entry 1OYP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
26 32anti-parallel
Strand 3
A
35 44anti-parallel
Strand 4
A
111 120anti-parallel
Strand 5
A
58 64parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
159 167anti-parallel
Strand 3
A
186 193anti-parallel
Strand 4
A
198 205anti-parallel
Strand 5
B
198 205anti-parallel
Strand 6
B
186 193anti-parallel
Strand 7
B
159 167anti-parallel
Strand 8
B
171 174anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
26 32anti-parallel
Strand 3
B
35 44anti-parallel
Strand 4
B
111 120anti-parallel
Strand 5
B
58 64parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 18first strand
Strand 2
C
26 32anti-parallel
Strand 3
C
35 44anti-parallel
Strand 4
C
111 120anti-parallel
Strand 5
C
58 64parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 174first strand
Strand 2
C
159 167anti-parallel
Strand 3
C
186 193anti-parallel
Strand 4
C
198 205anti-parallel
Strand 5
D
198 205anti-parallel
Strand 6
D
186 193anti-parallel
Strand 7
D
159 167anti-parallel
Strand 8
D
171 174anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 18first strand
Strand 2
D
26 32anti-parallel
Strand 3
D
35 44anti-parallel
Strand 4
D
111 120anti-parallel
Strand 5
D
58 64parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 18first strand
Strand 2
E
26 32anti-parallel
Strand 3
E
35 44anti-parallel
Strand 4
E
111 120anti-parallel
Strand 5
E
58 64parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
171 174first strand
Strand 2
E
159 167anti-parallel
Strand 3
E
186 193anti-parallel
Strand 4
E
198 205anti-parallel
Strand 5
F
198 205anti-parallel
Strand 6
F
186 193anti-parallel
Strand 7
F
159 167anti-parallel
Strand 8
F
171 174anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
14 18first strand
Strand 2
F
26 32anti-parallel
Strand 3
F
35 44anti-parallel
Strand 4
F
111 120anti-parallel
Strand 5
F
58 64parallel
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