Analysis of interatomic Contacts of Structural Units in PDB entry:
1OYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OYV entry

There are 3 chains in PDB entry 1OYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 275
B
 ALA 1GLN 275
I
 LYS 1LYS 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1OYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 11Right-handed alpha
Helix 2
2
A
12 19Right-handed alpha
Helix 3
3
A
63 74Right-handed alpha
Helix 4
4
A
103 118Right-handed alpha
Helix 5
5
A
132 145Right-handed alpha
Helix 6
6
A
219 238Right-handed alpha
Helix 7
7
A
242 253Right-handed alpha
Helix 8
8
A
259 264Right-handed alpha
Helix 9
9
A
269 274Right-handed alpha
Helix 10
10
B
6 11Right-handed alpha
Helix 11
11
B
12 19Right-handed alpha
Helix 12
12
B
63 74Right-handed alpha
Helix 13
13
B
103 117Right-handed alpha
Helix 14
14
B
132 145Right-handed alpha
Helix 15
15
B
219 238Right-handed alpha
Helix 16
16
B
242 253Right-handed alpha
Helix 17
17
B
259 264Right-handed alpha
Helix 18
18
B
269 275Right-handed alpha
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There are 8 sheets in PDB entry 1OYV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
89 94parallel
Strand 3
A
27 32parallel
Strand 4
A
121 124parallel
Strand 5
A
148 152parallel
Strand 6
A
175 180parallel
Strand 7
A
196 201parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
I
59 61anti-parallel
Strand 3
A
126 127anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 209first strand
Strand 2
A
213 217anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 49first strand
Strand 2
B
89 94parallel
Strand 3
B
27 32parallel
Strand 4
B
121 124parallel
Strand 5
B
148 152parallel
Strand 6
B
174 180parallel
Strand 7
B
196 201parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
I
2 4anti-parallel
Strand 3
B
126 127anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 209first strand
Strand 2
B
213 217anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
12 14first strand
Strand 2
I
98 100anti-parallel
Strand 3
I
106 109anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
46 49first strand
Strand 2
I
38 40anti-parallel
Strand 3
I
70 72anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il