Analysis of interatomic Contacts of Structural Units in PDB entry:
1OYX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1OYX entry

There are 3 chains in PDB entry 1OYX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 206	LEU 518
B	TRP 206	LEU 518
C	TRP 206	LEU 518

There are 40 helices in PDB entry 1OYX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	207	216	Right-handed alpha
Helix 2	2	A	221	225	Right-handed 310
Helix 3	3	A	226	231	Right-handed alpha
Helix 4	4	A	276	280	Right-handed 310
Helix 5	5	A	294	300	Right-handed alpha
Helix 6	6	A	310	314	Right-handed 310
Helix 7	7	A	315	324	Right-handed alpha
Helix 8	8	A	329	333	Right-handed 310
Helix 9	9	A	383	387	Right-handed 310
Helix 10	10	A	401	407	Right-handed alpha
Helix 11	11	A	423	431	Right-handed alpha
Helix 12	12	A	437	441	Right-handed 310
Helix 13	13	A	487	491	Right-handed 310
Helix 14	14	A	505	511	Right-handed alpha
Helix 15	15	B	207	216	Right-handed alpha
Helix 16	16	B	221	225	Right-handed 310
Helix 17	17	B	226	231	Right-handed alpha
Helix 18	18	B	276	280	Right-handed 310
Helix 19	19	B	294	300	Right-handed alpha
Helix 20	20	B	315	324	Right-handed alpha
Helix 21	21	B	329	333	Right-handed 310
Helix 22	22	B	383	387	Right-handed 310
Helix 23	23	B	401	407	Right-handed alpha
Helix 24	24	B	423	432	Right-handed alpha
Helix 25	25	B	437	441	Right-handed 310
Helix 26	26	B	487	491	Right-handed 310
Helix 27	27	B	505	511	Right-handed alpha
Helix 28	28	C	207	215	Right-handed alpha
Helix 29	29	C	221	225	Right-handed 310
Helix 30	30	C	226	231	Right-handed alpha
Helix 31	31	C	276	280	Right-handed 310
Helix 32	32	C	294	300	Right-handed alpha
Helix 33	33	C	315	324	Right-handed alpha
Helix 34	34	C	329	333	Right-handed 310
Helix 35	35	C	401	407	Right-handed alpha
Helix 36	36	C	418	422	Right-handed 310
Helix 37	37	C	423	432	Right-handed alpha
Helix 38	38	C	437	441	Right-handed 310
Helix 39	39	C	487	491	Right-handed 310
Helix 40	40	C	505	511	Right-handed alpha

There are 15 sheets in PDB entry 1OYX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	284	first strand
Strand 2	A	267	272	anti-parallel
Strand 3	A	251	264	anti-parallel
Strand 4	A	243	248	anti-parallel
Strand 5	A	290	291	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	284	first strand
Strand 2	A	267	272	anti-parallel
Strand 3	A	251	264	anti-parallel
Strand 4	A	303	304	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	390	first strand
Strand 2	A	375	379	anti-parallel
Strand 3	A	362	367	anti-parallel
Strand 4	A	350	354	anti-parallel
Strand 5	A	397	398	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	495	first strand
Strand 2	A	478	483	anti-parallel
Strand 3	A	466	474	anti-parallel
Strand 4	A	454	458	anti-parallel
Strand 5	A	501	502	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	284	first strand
Strand 2	B	267	272	anti-parallel
Strand 3	B	251	264	anti-parallel
Strand 4	B	243	248	anti-parallel
Strand 5	B	290	291	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	284	first strand
Strand 2	B	267	272	anti-parallel
Strand 3	B	251	264	anti-parallel
Strand 4	B	303	304	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	390	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	362	371	anti-parallel
Strand 4	B	350	354	anti-parallel
Strand 5	B	397	398	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	390	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	362	371	anti-parallel
Strand 4	B	410	411	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	495	first strand
Strand 2	B	478	483	anti-parallel
Strand 3	B	466	474	anti-parallel
Strand 4	B	454	458	anti-parallel
Strand 5	B	501	502	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	284	first strand
Strand 2	C	267	272	anti-parallel
Strand 3	C	251	264	anti-parallel
Strand 4	C	243	248	anti-parallel
Strand 5	C	290	291	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	284	first strand
Strand 2	C	267	272	anti-parallel
Strand 3	C	251	264	anti-parallel
Strand 4	C	303	304	parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	390	first strand
Strand 2	C	374	379	anti-parallel
Strand 3	C	362	371	anti-parallel
Strand 4	C	350	354	anti-parallel
Strand 5	C	397	398	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	390	first strand
Strand 2	C	374	379	anti-parallel
Strand 3	C	362	371	anti-parallel
Strand 4	C	410	411	parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	495	first strand
Strand 2	C	478	483	anti-parallel
Strand 3	C	466	474	anti-parallel
Strand 4	C	454	458	anti-parallel
Strand 5	C	501	502	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	495	first strand
Strand 2	C	478	483	anti-parallel
Strand 3	C	466	474	anti-parallel
Strand 4	C	514	515	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1OYX

Analysis of interatomic Contacts of Structural Units in PDB entry:
1OYX