Analysis of interatomic Contacts of Structural Units in PDB entry:
1P0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P0F entry

There are 2 chains in PDB entry 1P0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1001TYR 1372
B
 CYS 2001TYR 2372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1P0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1046 1054Right-handed alpha
Helix 2
2
A
1100 1105Right-handed alpha
Helix 3
3
A
1165 1172Right-handed 310
Helix 4
4
A
1173 1184Right-handed alpha
Helix 5
5
A
1200 1214Right-handed alpha
Helix 6
6
A
1224 1226Right-handed 310
Helix 7
7
A
1227 1234Right-handed alpha
Helix 8
8
A
1241 1245Right-handed 310
Helix 9
9
A
1248 1257Right-handed alpha
Helix 10
10
A
1270 1280Right-handed alpha
Helix 11
11
A
1304 1309Right-handed alpha
Helix 12
12
A
1317 1321Right-handed 310
Helix 13
13
A
1322 1324Right-handed 310
Helix 14
14
A
1325 1335Right-handed alpha
Helix 15
15
A
1339 1342Right-handed 310
Helix 16
16
A
1349 1351Right-handed 310
Helix 17
17
A
1352 1360Right-handed alpha
Helix 18
18
B
2046 2054Right-handed alpha
Helix 19
19
B
2100 2105Right-handed alpha
Helix 20
20
B
2165 2172Right-handed 310
Helix 21
21
B
2173 2184Right-handed alpha
Helix 22
22
B
2200 2213Right-handed alpha
Helix 23
23
B
2224 2226Right-handed 310
Helix 24
24
B
2227 2234Right-handed alpha
Helix 25
25
B
2241 2245Right-handed 310
Helix 26
26
B
2248 2257Right-handed alpha
Helix 27
27
B
2270 2280Right-handed alpha
Helix 28
28
B
2304 2309Right-handed alpha
Helix 29
29
B
2317 2321Right-handed 310
Helix 30
30
B
2322 2324Right-handed 310
Helix 31
31
B
2325 2335Right-handed alpha
Helix 32
32
B
2339 2342Right-handed 310
Helix 33
33
B
2349 2351Right-handed 310
Helix 34
34
B
2352 2360Right-handed alpha
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There are 8 sheets in PDB entry 1P0F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1007 1013first strand
Strand 2
A
1022 1028anti-parallel
Strand 3
A
1130 1132anti-parallel
Strand 4
A
1135 1137anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1157 1160first strand
Strand 2
A
1088 1091anti-parallel
Strand 3
A
1069 1076anti-parallel
Strand 4
A
1035 1044anti-parallel
Strand 5
A
1149 1153anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1157 1160first strand
Strand 2
A
1088 1091anti-parallel
Strand 3
A
1069 1076anti-parallel
Strand 4
A
1035 1044anti-parallel
Strand 5
A
1367 1371anti-parallel
Strand 6
A
1344 1348parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1238 1240first strand
Strand 2
A
1217 1221parallel
Strand 3
A
1193 1197parallel
Strand 4
A
1263 1266parallel
Strand 5
A
1287 1290parallel
Strand 6
A
1312 1315parallel
Strand 7
B
2312 2315anti-parallel
Strand 8
B
2287 2290parallel
Strand 9
B
2263 2266parallel
Strand 10
B
2193 2197parallel
Strand 11
B
2217 2221parallel
Strand 12
B
2238 2240parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1300 1302first strand
Strand 2
B
2300 2302anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2007 2013first strand
Strand 2
B
2022 2028anti-parallel
Strand 3
B
2130 2132anti-parallel
Strand 4
B
2135 2137anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2157 2160first strand
Strand 2
B
2088 2091anti-parallel
Strand 3
B
2069 2076anti-parallel
Strand 4
B
2035 2044anti-parallel
Strand 5
B
2149 2153anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2157 2160first strand
Strand 2
B
2088 2091anti-parallel
Strand 3
B
2069 2076anti-parallel
Strand 4
B
2035 2044anti-parallel
Strand 5
B
2367 2371anti-parallel
Strand 6
B
2344 2348parallel
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