Analysis of interatomic Contacts of Structural Units in PDB entry:
1P0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P0Y entry

There are 3 chains in PDB entry 1P0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 49TYR 486
B
 PRO 48GLN 488
C
 SER 49PHE 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 1P0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 61Right-handed alpha
Helix 2
2
A
100 104Right-handed 310
Helix 3
3
A
106 112Right-handed alpha
Helix 4
4
A
113 117Right-handed 310
Helix 5
5
A
123 138Right-handed alpha
Helix 6
6
A
161 167Right-handed alpha
Helix 7
7
A
171 195Right-handed alpha
Helix 8
8
A
196 200Right-handed 310
Helix 9
9
A
208 223Right-handed alpha
Helix 10
10
A
237 241Right-handed 310
Helix 11
11
A
292 300Right-handed alpha
Helix 12
12
A
306 309Right-handed 310
Helix 13
13
A
324 335Right-handed alpha
Helix 14
14
A
354 363Right-handed alpha
Helix 15
15
A
365 377Right-handed 310
Helix 16
16
A
379 387Right-handed alpha
Helix 17
17
A
389 409Right-handed alpha
Helix 18
18
A
414 422Right-handed alpha
Helix 19
19
A
427 457Right-handed alpha
Helix 20
20
A
463 470Right-handed alpha
Helix 21
21
A
479 484Right-handed alpha
Helix 22
22
B
49 64Right-handed alpha
Helix 23
23
B
102 104Right-handed 310
Helix 24
24
B
106 112Right-handed alpha
Helix 25
25
B
123 138Right-handed alpha
Helix 26
26
B
143 148Right-handed alpha
Helix 27
27
B
156 160Right-handed 310
Helix 28
28
B
161 167Right-handed alpha
Helix 29
29
B
171 195Right-handed alpha
Helix 30
30
B
196 200Right-handed 310
Helix 31
31
B
208 223Right-handed alpha
Helix 32
32
B
237 241Right-handed 310
Helix 33
33
B
257 261Right-handed 310
Helix 34
34
B
263 266Right-handed 310
Helix 35
35
B
292 300Right-handed alpha
Helix 36
36
B
306 309Right-handed 310
Helix 37
37
B
324 335Right-handed alpha
Helix 38
38
B
354 363Right-handed alpha
Helix 39
39
B
365 377Right-handed 310
Helix 40
40
B
379 387Right-handed alpha
Helix 41
41
B
389 411Right-handed alpha
Helix 42
42
B
414 423Right-handed alpha
Helix 43
43
B
427 457Right-handed alpha
Helix 44
44
B
463 469Right-handed alpha
Helix 45
45
B
470 472Right-handed 310
Helix 46
46
B
478 487Right-handed alpha
Helix 47
47
C
51 64Right-handed alpha
Helix 48
48
C
102 104Right-handed 310
Helix 49
49
C
106 112Right-handed alpha
Helix 50
50
C
123 138Right-handed alpha
Helix 51
51
C
143 148Right-handed alpha
Helix 52
52
C
156 160Right-handed 310
Helix 53
53
C
161 167Right-handed alpha
Helix 54
54
C
171 195Right-handed alpha
Helix 55
55
C
208 223Right-handed alpha
Helix 56
56
C
237 241Right-handed 310
Helix 57
57
C
263 265Right-handed 310
Helix 58
58
C
292 300Right-handed alpha
Helix 59
59
C
306 309Right-handed 310
Helix 60
60
C
324 335Right-handed alpha
Helix 61
61
C
354 363Right-handed alpha
Helix 62
62
C
364 369Right-handed alpha
Helix 63
63
C
370 377Right-handed 310
Helix 64
64
C
379 387Right-handed alpha
Helix 65
65
C
389 410Right-handed alpha
Helix 66
66
C
414 423Right-handed alpha
Helix 67
67
C
427 457Right-handed alpha
Helix 68
68
C
463 469Right-handed alpha
Helix 69
69
C
479 484Right-handed alpha
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There are 12 sheets in PDB entry 1P0Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
81 86anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
269 272anti-parallel
Strand 3
A
254 256anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
284 285parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 317first strand
Strand 2
A
340 346anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
81 86anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 100first strand
Strand 2
B
268 272anti-parallel
Strand 3
B
253 256anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 243first strand
Strand 2
B
284 285parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 317first strand
Strand 2
B
340 346anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 78first strand
Strand 2
C
81 86anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 100first strand
Strand 2
C
267 272anti-parallel
Strand 3
C
254 258anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
242 243first strand
Strand 2
C
284 285parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
311 317first strand
Strand 2
C
340 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il