Analysis of interatomic Contacts of Structural Units in PDB entry:
1P15


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P15 entry

There are 2 chains in PDB entry 1P15 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 542ALA 786
B
 MET 542SER 788
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1P15. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
543 547Right-handed 310
Helix 2
2
A
605 616Right-handed alpha
Helix 3
3
A
700 712Right-handed alpha
Helix 4
4
A
728 748Right-handed alpha
Helix 5
5
A
753 761Right-handed alpha
Helix 6
6
A
773 783Right-handed alpha
Helix 7
7
B
550 554Right-handed 310
Helix 8
8
B
562 566Right-handed 310
Helix 9
9
B
602 604Right-handed 310
Helix 10
10
B
605 616Right-handed alpha
Helix 11
11
B
698 712Right-handed alpha
Helix 12
12
B
728 747Right-handed alpha
Helix 13
13
B
751 761Right-handed alpha
Helix 14
14
B
769 785Right-handed alpha
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There are 4 sheets in PDB entry 1P15. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
595 598anti-parallel
Strand 3
A
720 723parallel
Strand 4
A
620 623parallel
Strand 5
A
677 686parallel
Strand 6
A
663 671anti-parallel
Strand 7
A
658 659anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 647first strand
Strand 2
A
650 651anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
583 588first strand
Strand 2
B
591 598anti-parallel
Strand 3
B
720 723parallel
Strand 4
B
620 623parallel
Strand 5
B
678 686parallel
Strand 6
B
663 671anti-parallel
Strand 7
B
650 659anti-parallel
Strand 8
B
644 647anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
628 629first strand
Strand 2
B
632 633anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il