Analysis of interatomic Contacts of Structural Units in PDB entry:
1P1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P1J entry

There are 2 chains in PDB entry 1P1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 9LEU 533
B
 THR 10LEU 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 1P1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 90Right-handed alpha
Helix 2
2
A
108 113Right-handed alpha
Helix 3
3
A
131 133Right-handed 310
Helix 4
4
A
138 140Right-handed 310
Helix 5
5
A
153 162Right-handed alpha
Helix 6
6
A
165 177Right-handed alpha
Helix 7
7
A
187 191Right-handed 310
Helix 8
8
A
192 199Right-handed 310
Helix 9
9
A
215 234Right-handed alpha
Helix 10
10
A
260 270Right-handed alpha
Helix 11
11
A
276 288Right-handed alpha
Helix 12
12
A
302 313Right-handed alpha
Helix 13
13
A
324 339Right-handed alpha
Helix 14
14
A
354 361Right-handed alpha
Helix 15
15
A
362 376Right-handed alpha
Helix 16
16
A
377 383Right-handed alpha
Helix 17
17
A
406 409Right-handed 310
Helix 18
18
A
423 425Right-handed 310
Helix 19
19
A
438 458Right-handed alpha
Helix 20
20
A
481 488Right-handed 310
Helix 21
21
A
502 518Right-handed alpha
Helix 22
22
A
527 532Right-handed alpha
Helix 23
23
B
75 90Right-handed alpha
Helix 24
24
B
108 113Right-handed alpha
Helix 25
25
B
131 133Right-handed 310
Helix 26
26
B
138 140Right-handed 310
Helix 27
27
B
153 162Right-handed alpha
Helix 28
28
B
165 177Right-handed alpha
Helix 29
29
B
187 191Right-handed 310
Helix 30
30
B
192 199Right-handed 310
Helix 31
31
B
215 235Right-handed alpha
Helix 32
32
B
260 270Right-handed alpha
Helix 33
33
B
276 289Right-handed alpha
Helix 34
34
B
302 313Right-handed alpha
Helix 35
35
B
324 339Right-handed alpha
Helix 36
36
B
354 361Right-handed alpha
Helix 37
37
B
362 376Right-handed alpha
Helix 38
38
B
377 383Right-handed alpha
Helix 39
39
B
406 409Right-handed 310
Helix 40
40
B
423 425Right-handed 310
Helix 41
41
B
438 457Right-handed alpha
Helix 42
42
B
481 488Right-handed 310
Helix 43
43
B
502 518Right-handed alpha
Helix 44
44
B
527 532Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1P1J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
25 39anti-parallel
Strand 3
B
44 59anti-parallel
Strand 4
A
11 14parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
25 39anti-parallel
Strand 3
B
44 59anti-parallel
Strand 4
B
459 464anti-parallel
Strand 5
B
475 476anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
25 39anti-parallel
Strand 3
A
44 59anti-parallel
Strand 4
A
459 463anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
25 39anti-parallel
Strand 3
A
44 59anti-parallel
Strand 4
B
11 14parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
66 71parallel
Strand 3
A
239 243parallel
Strand 4
A
292 294parallel
Strand 5
A
316 318parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 119first strand
Strand 2
A
125 129anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 404first strand
Strand 2
A
342 352parallel
Strand 3
A
411 421anti-parallel
Strand 4
A
427 437anti-parallel
Strand 5
B
427 437anti-parallel
Strand 6
B
411 421anti-parallel
Strand 7
B
342 352anti-parallel
Strand 8
B
397 404parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 147first strand
Strand 2
B
66 71parallel
Strand 3
B
239 243parallel
Strand 4
B
292 294parallel
Strand 5
B
316 318parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 119first strand
Strand 2
B
125 129anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il