Analysis of interatomic Contacts of Structural Units in PDB entry:
1P35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P35 entry

There are 3 chains in PDB entry 1P35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 2ALA 300
B
 CYS 2LYS 299
C
 CYS 2ALA 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1P35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 78Right-handed alpha
Helix 2
2
A
108 122Right-handed 310
Helix 3
3
A
127 136Right-handed alpha
Helix 4
4
A
138 141Right-handed alpha
Helix 5
5
A
207 215Right-handed alpha
Helix 6
6
B
63 78Right-handed alpha
Helix 7
7
B
108 113Right-handed alpha
Helix 8
8
B
115 122Right-handed alpha
Helix 9
9
B
127 136Right-handed alpha
Helix 10
10
B
138 140Right-handed 310
Helix 11
11
B
207 215Right-handed alpha
Helix 12
12
C
63 78Right-handed alpha
Helix 13
13
C
108 122Right-handed alpha
Helix 14
14
C
127 136Right-handed alpha
Helix 15
15
C
138 140Right-handed 310
Helix 16
16
C
207 215Right-handed alpha
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There are 12 sheets in PDB entry 1P35. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
149 155anti-parallel
Strand 4
A
102 107anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
165 173anti-parallel
Strand 3
A
25 32anti-parallel
Strand 4
A
14 22anti-parallel
Strand 5
A
192 200parallel
Strand 6
A
277 287anti-parallel
Strand 7
A
267 272anti-parallel
Strand 8
A
239 247anti-parallel
Strand 9
A
228 235anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
293 296anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
260 264anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
43 49anti-parallel
Strand 3
B
149 155anti-parallel
Strand 4
B
102 107anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 56first strand
Strand 2
B
165 173anti-parallel
Strand 3
B
25 32anti-parallel
Strand 4
B
14 22anti-parallel
Strand 5
B
192 201parallel
Strand 6
B
277 287anti-parallel
Strand 7
B
267 272anti-parallel
Strand 8
B
239 247anti-parallel
Strand 9
B
228 235anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
293 296anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 251first strand
Strand 2
B
259 264anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
43 49anti-parallel
Strand 3
C
149 155anti-parallel
Strand 4
C
102 107anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
165 171anti-parallel
Strand 3
C
25 32anti-parallel
Strand 4
C
14 22anti-parallel
Strand 5
C
192 200parallel
Strand 6
C
277 287anti-parallel
Strand 7
C
267 272anti-parallel
Strand 8
C
240 247anti-parallel
Strand 9
C
228 235anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 180first strand
Strand 2
C
293 296anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
246 251first strand
Strand 2
C
259 264anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il