Analysis of interatomic Contacts of Structural Units in PDB entry:
1P3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P3J entry

There is 1 chain in PDB entry 1P3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1P3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
31 41Right-handed alpha
Helix 3
3
A
43 56Right-handed alpha
Helix 4
4
A
60 72Right-handed alpha
Helix 5
5
A
73 78Right-handed 310
Helix 6
6
A
89 104Right-handed alpha
Helix 7
7
A
116 125Right-handed alpha
Helix 8
8
A
160 163Right-handed 310
Helix 9
9
A
164 177Right-handed alpha
Helix 10
10
A
178 190Right-handed alpha
Helix 11
11
A
200 212Right-handed alpha
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There are 2 sheets in PDB entry 1P3J. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
81 84parallel
Strand 3
A
2 6parallel
Strand 4
A
109 114parallel
Strand 5
A
192 196parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
127 130anti-parallel
Strand 3
A
157 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il