Analysis of interatomic Contacts of Structural Units in PDB entry:
1P3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P3Y entry

There is 1 chain in PDB entry 1P3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 ILE 3LYS 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 1P3Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
5 8Right-handed 310
Helix 2
2
1
18 23Right-handed 310
Helix 3
3
1
24 33Right-handed alpha
Helix 4
4
1
43 50Right-handed alpha
Helix 5
5
1
51 56Right-handed alpha
Helix 6
6
1
57 59Right-handed 310
Helix 7
7
1
74 82Right-handed alpha
Helix 8
8
1
91 100Right-handed alpha
Helix 9
9
1
105 114Right-handed alpha
Helix 10
10
1
125 130Right-handed alpha
Helix 11
11
1
131 145Right-handed alpha
Helix 12
12
1
172 184Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 1P3Y.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
61 63first strand
Strand 2
1
37 42parallel
Strand 3
1
10 15parallel
Strand 4
1
84 90parallel
Strand 5
1
119 122parallel
Strand 6
1
147 148parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il