Analysis of interatomic Contacts of Structural Units in PDB entry:
1P5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P5J entry

There is 1 chain in PDB entry 1P5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4MET 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1P5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 24Right-handed alpha
Helix 2
2
A
32 40Right-handed 310
Helix 3
3
A
41 55Right-handed alpha
Helix 4
4
A
66 80Right-handed alpha
Helix 5
5
A
92 102Right-handed alpha
Helix 6
6
A
112 127Right-handed alpha
Helix 7
7
A
138 146Right-handed alpha
Helix 8
8
A
146 156Right-handed alpha
Helix 9
9
A
170 183Right-handed alpha
Helix 10
10
A
199 208Right-handed alpha
Helix 11
11
A
220 224Right-handed 310
Helix 12
12
A
229 239Right-handed alpha
Helix 13
13
A
247 262Right-handed alpha
Helix 14
14
A
267 279Right-handed alpha
Helix 15
15
A
280 288Right-handed alpha
Helix 16
16
A
309 321Right-handed alpha
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There are 2 sheets in PDB entry 1P5J. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
27 30anti-parallel
Strand 3
A
298 301parallel
Strand 4
A
162 166parallel
Strand 5
A
190 195parallel
Strand 6
A
241 246parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
83 87parallel
Strand 3
A
59 62parallel
Strand 4
A
130 132parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il