Analysis of interatomic Contacts of Structural Units in PDB entry:
1P5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P5R entry

There are 2 chains in PDB entry 1P5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2VAL 428
B
 THR 2VAL 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 1P5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 29Right-handed alpha
Helix 2
2
A
57 62Right-handed alpha
Helix 3
3
A
76 88Right-handed alpha
Helix 4
4
A
100 105Right-handed alpha
Helix 5
5
A
108 116Right-handed alpha
Helix 6
6
A
139 147Right-handed alpha
Helix 7
7
A
169 188Right-handed alpha
Helix 8
8
A
200 208Right-handed alpha
Helix 9
9
A
208 222Right-handed alpha
Helix 10
10
A
227 231Right-handed 310
Helix 11
11
A
285 287Right-handed 310
Helix 12
12
A
288 296Right-handed alpha
Helix 13
13
A
298 302Right-handed 310
Helix 14
14
A
309 314Right-handed alpha
Helix 15
15
A
316 327Right-handed alpha
Helix 16
16
A
332 343Right-handed alpha
Helix 17
17
A
352 358Right-handed alpha
Helix 18
18
A
359 365Right-handed alpha
Helix 19
19
A
404 413Right-handed alpha
Helix 20
20
A
415 425Right-handed alpha
Helix 21
21
B
17 29Right-handed alpha
Helix 22
22
B
57 62Right-handed alpha
Helix 23
23
B
76 88Right-handed alpha
Helix 24
24
B
100 105Right-handed alpha
Helix 25
25
B
108 116Right-handed alpha
Helix 26
26
B
139 147Right-handed alpha
Helix 27
27
B
148 153Right-handed alpha
Helix 28
28
B
169 191Right-handed alpha
Helix 29
29
B
200 208Right-handed alpha
Helix 30
30
B
208 222Right-handed alpha
Helix 31
31
B
227 231Right-handed 310
Helix 32
32
B
288 296Right-handed alpha
Helix 33
33
B
316 329Right-handed alpha
Helix 34
34
B
332 342Right-handed alpha
Helix 35
35
B
352 358Right-handed alpha
Helix 36
36
B
359 365Right-handed alpha
Helix 37
37
B
404 413Right-handed alpha
Helix 38
38
B
415 425Right-handed alpha
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There are 6 sheets in PDB entry 1P5R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
32 37parallel
Strand 3
A
9 12parallel
Strand 4
A
92 95parallel
Strand 5
A
120 125parallel
Strand 6
A
195 199parallel
Strand 7
B
386 388anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 268first strand
Strand 2
A
279 283anti-parallel
Strand 3
A
347 349anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 371first strand
Strand 2
A
379 382anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
B
195 199anti-parallel
Strand 3
B
120 125parallel
Strand 4
B
92 95parallel
Strand 5
B
9 12parallel
Strand 6
B
32 37parallel
Strand 7
B
68 71parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 268first strand
Strand 2
B
279 282anti-parallel
Strand 3
B
347 349anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 371first strand
Strand 2
B
379 382anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il