Analysis of interatomic Contacts of Structural Units in PDB entry:
1P6W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P6W entry

There is 1 chain in PDB entry 1P6W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1LYS 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1P6W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
18 24Right-handed alpha
Helix 3
3
A
26 33Right-handed alpha
Helix 4
4
A
67 81Right-handed alpha
Helix 5
5
A
120 124Right-handed 310
Helix 6
6
A
154 171Right-handed alpha
Helix 7
7
A
181 185Right-handed 310
Helix 8
8
A
186 198Right-handed alpha
Helix 9
9
A
222 237Right-handed alpha
Helix 10
10
A
238 241Right-handed 310
Helix 11
11
A
247 258Right-handed alpha
Helix 12
12
A
261 265Right-handed 310
Helix 13
13
A
274 279Right-handed alpha
Helix 14
14
A
302 304Right-handed 310
Helix 15
15
A
305 316Right-handed alpha
Helix 16
16
A
324 329Right-handed alpha
Helix 17
17
A
332 346Right-handed alpha
Helix 18
18
A
382 386Right-handed 310
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There are 3 sheets in PDB entry 1P6W. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
37 40parallel
Strand 3
A
84 89parallel
Strand 4
A
176 179parallel
Strand 5
A
202 204parallel
Strand 6
A
243 246parallel
Strand 7
A
283 286parallel
Strand 8
A
319 323parallel
Strand 9
A
4 6parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
105 107anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 360first strand
Strand 2
A
363 368anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
399 403anti-parallel
Strand 5
A
391 396anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il