Analysis of interatomic Contacts of Structural Units in PDB entry:
1P7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P7D entry

There are 8 chains in PDB entry 1P7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 C 1 T 13
D
 T 14 G 39
E
 C 1 T 13
F
 T 14 G 39
A
 MET 74GLN 341
A
 ARG 343LYS 356
B
 MET 74GLN 341
B
 ARG 343LYS 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1P7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 88Right-handed alpha
Helix 2
2
A
93 111Right-handed alpha
Helix 3
3
A
120 134Right-handed alpha
Helix 4
4
A
136 157Right-handed alpha
Helix 5
5
A
181 192Right-handed alpha
Helix 6
6
A
193 195Right-handed 310
Helix 7
7
A
196 210Right-handed alpha
Helix 8
8
A
212 217Right-handed alpha
Helix 9
9
A
220 224Right-handed 310
Helix 10
10
A
255 266Right-handed alpha
Helix 11
11
A
281 297Right-handed alpha
Helix 12
12
A
308 322Right-handed alpha
Helix 13
13
A
323 332Right-handed alpha
Helix 14
14
B
75 89Right-handed alpha
Helix 15
15
B
93 111Right-handed alpha
Helix 16
16
B
120 134Right-handed alpha
Helix 17
17
B
136 157Right-handed alpha
Helix 18
18
B
181 192Right-handed alpha
Helix 19
19
B
193 195Right-handed 310
Helix 20
20
B
196 210Right-handed alpha
Helix 21
21
B
212 217Right-handed alpha
Helix 22
22
B
220 224Right-handed 310
Helix 23
23
B
255 266Right-handed alpha
Helix 24
24
B
281 297Right-handed alpha
Helix 25
25
B
308 322Right-handed alpha
Helix 26
26
B
323 332Right-handed alpha
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There are 4 sheets in PDB entry 1P7D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
A
239 243anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
253 254anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
B
239 243parallel
Strand 3
B
228 232anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 248first strand
Strand 2
B
253 254anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il