Analysis of interatomic Contacts of Structural Units in PDB entry:
1P8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1P8J entry

There are 16 chains in PDB entry 1P8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 109	LEU 578
B	VAL 109	GLU 576
C	VAL 109	PRO 575
D	VAL 109	PRO 575
E	VAL 109	PRO 575
F	ASP 108	PRO 575
G	VAL 109	PRO 575
H	TYR 110	PRO 575
J	ARG 802	LYS 804
K	ARG 802	LYS 804
L	ARG 802	LYS 804
M	ARG 802	LYS 804
N	ARG 802	LYS 804
P	ARG 802	LYS 804
Q	ARG 802	LYS 804
R	ARG 802	LYS 804

There are 56 helices in PDB entry 1P8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	134	140	Right-handed alpha
Helix 2	2	A	193	203	Right-handed alpha
Helix 3	3	A	232	241	Right-handed alpha
Helix 4	4	A	267	281	Right-handed alpha
Helix 5	5	A	366	385	Right-handed alpha
Helix 6	6	A	390	400	Right-handed alpha
Helix 7	7	A	430	439	Right-handed alpha
Helix 8	8	B	134	140	Right-handed alpha
Helix 9	9	B	193	203	Right-handed alpha
Helix 10	10	B	232	241	Right-handed alpha
Helix 11	11	B	267	281	Right-handed alpha
Helix 12	12	B	366	385	Right-handed alpha
Helix 13	13	B	390	400	Right-handed alpha
Helix 14	14	B	430	439	Right-handed alpha
Helix 15	15	C	134	140	Right-handed alpha
Helix 16	16	C	193	203	Right-handed alpha
Helix 17	17	C	232	241	Right-handed alpha
Helix 18	18	C	267	281	Right-handed alpha
Helix 19	19	C	366	385	Right-handed alpha
Helix 20	20	C	390	400	Right-handed alpha
Helix 21	21	C	430	439	Right-handed alpha
Helix 22	22	D	134	140	Right-handed alpha
Helix 23	23	D	193	203	Right-handed alpha
Helix 24	24	D	232	241	Right-handed alpha
Helix 25	25	D	267	281	Right-handed alpha
Helix 26	26	D	366	385	Right-handed alpha
Helix 27	27	D	390	400	Right-handed alpha
Helix 28	28	D	430	439	Right-handed alpha
Helix 29	29	E	134	140	Right-handed alpha
Helix 30	30	E	193	203	Right-handed alpha
Helix 31	31	E	232	241	Right-handed alpha
Helix 32	32	E	267	281	Right-handed alpha
Helix 33	33	E	366	385	Right-handed alpha
Helix 34	34	E	390	400	Right-handed alpha
Helix 35	35	E	430	439	Right-handed alpha
Helix 36	36	F	134	140	Right-handed alpha
Helix 37	37	F	193	203	Right-handed alpha
Helix 38	38	F	232	241	Right-handed alpha
Helix 39	39	F	267	281	Right-handed alpha
Helix 40	40	F	366	385	Right-handed alpha
Helix 41	41	F	390	400	Right-handed alpha
Helix 42	42	F	430	439	Right-handed alpha
Helix 43	43	G	134	140	Right-handed alpha
Helix 44	44	G	193	203	Right-handed alpha
Helix 45	45	G	232	241	Right-handed alpha
Helix 46	46	G	267	281	Right-handed alpha
Helix 47	47	G	366	385	Right-handed alpha
Helix 48	48	G	390	400	Right-handed alpha
Helix 49	49	G	430	439	Right-handed alpha
Helix 50	50	H	134	140	Right-handed alpha
Helix 51	51	H	193	203	Right-handed alpha
Helix 52	52	H	232	241	Right-handed alpha
Helix 53	53	H	267	281	Right-handed alpha
Helix 54	54	H	366	385	Right-handed alpha
Helix 55	55	H	390	400	Right-handed alpha
Helix 56	56	H	430	439	Right-handed alpha

There are 8 sheets in PDB entry 1P8J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 21 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	153	first strand
Strand 2	A	173	176	first strand
Strand 3	A	178	179	first strand
Strand 4	A	220	226	first strand
Strand 5	A	248	252	first strand
Strand 6	A	288	293	first strand
Strand 7	A	313	320	first strand
Strand 8	A	338	342	first strand
Strand 9	A	353	355	first strand
Strand 10	A	359	361	first strand
Strand 11	A	412	414	first strand
Strand 12	A	418	420	first strand
Strand 13	A	448	455	first strand
Strand 14	A	459	461	first strand
Strand 15	A	463	471	first strand
Strand 16	A	487	495	first strand
Strand 17	A	500	506	first strand
Strand 18	A	511	516	first strand
Strand 19	A	528	535	first strand
Strand 20	A	545	554	first strand
Strand 21	A	560	573	first strand

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There are 21 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	153	first strand
Strand 2	B	173	176	first strand
Strand 3	B	178	179	first strand
Strand 4	B	220	226	first strand
Strand 5	B	248	252	first strand
Strand 6	B	288	293	first strand
Strand 7	B	313	320	first strand
Strand 8	B	338	342	first strand
Strand 9	B	353	355	first strand
Strand 10	B	359	361	first strand
Strand 11	B	412	414	first strand
Strand 12	B	418	420	first strand
Strand 13	B	448	455	first strand
Strand 14	B	459	461	first strand
Strand 15	B	463	471	first strand
Strand 16	B	487	495	first strand
Strand 17	B	500	506	first strand
Strand 18	B	511	516	first strand
Strand 19	B	528	535	first strand
Strand 20	B	545	554	first strand
Strand 21	B	560	573	first strand

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There are 21 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	153	first strand
Strand 2	C	173	176	first strand
Strand 3	C	178	179	first strand
Strand 4	C	220	226	first strand
Strand 5	C	248	252	first strand
Strand 6	C	288	293	first strand
Strand 7	C	313	320	first strand
Strand 8	C	338	342	first strand
Strand 9	C	353	355	first strand
Strand 10	C	359	361	first strand
Strand 11	C	412	414	first strand
Strand 12	C	418	420	first strand
Strand 13	C	448	455	first strand
Strand 14	C	459	461	first strand
Strand 15	C	463	471	first strand
Strand 16	C	487	495	first strand
Strand 17	C	500	506	first strand
Strand 18	C	511	516	first strand
Strand 19	C	528	535	first strand
Strand 20	C	545	554	first strand
Strand 21	C	560	573	first strand

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There are 21 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	153	first strand
Strand 2	D	173	176	first strand
Strand 3	D	178	179	first strand
Strand 4	D	220	226	first strand
Strand 5	D	248	252	first strand
Strand 6	D	288	293	first strand
Strand 7	D	313	320	first strand
Strand 8	D	338	342	first strand
Strand 9	D	353	355	first strand
Strand 10	D	359	361	first strand
Strand 11	D	412	414	first strand
Strand 12	D	418	420	first strand
Strand 13	D	448	455	first strand
Strand 14	D	459	461	first strand
Strand 15	D	463	471	first strand
Strand 16	D	487	495	first strand
Strand 17	D	500	506	first strand
Strand 18	D	511	516	first strand
Strand 19	D	528	535	first strand
Strand 20	D	545	554	first strand
Strand 21	D	560	573	first strand

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There are 21 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	153	first strand
Strand 2	E	173	176	first strand
Strand 3	E	178	179	first strand
Strand 4	E	220	226	first strand
Strand 5	E	248	252	first strand
Strand 6	E	288	293	first strand
Strand 7	E	313	320	first strand
Strand 8	E	338	342	first strand
Strand 9	E	353	355	first strand
Strand 10	E	359	361	first strand
Strand 11	E	412	414	first strand
Strand 12	E	418	420	first strand
Strand 13	E	448	455	first strand
Strand 14	E	459	461	first strand
Strand 15	E	463	471	first strand
Strand 16	E	487	495	first strand
Strand 17	E	500	506	first strand
Strand 18	E	511	516	first strand
Strand 19	E	528	535	first strand
Strand 20	E	545	554	first strand
Strand 21	E	560	573	first strand

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There are 21 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	153	first strand
Strand 2	F	173	176	first strand
Strand 3	F	178	179	first strand
Strand 4	F	220	226	first strand
Strand 5	F	248	252	first strand
Strand 6	F	288	293	first strand
Strand 7	F	313	320	first strand
Strand 8	F	338	342	first strand
Strand 9	F	353	355	first strand
Strand 10	F	359	361	first strand
Strand 11	F	412	414	first strand
Strand 12	F	418	420	first strand
Strand 13	F	448	455	first strand
Strand 14	F	459	461	first strand
Strand 15	F	463	471	first strand
Strand 16	F	487	495	first strand
Strand 17	F	500	506	first strand
Strand 18	F	511	516	first strand
Strand 19	F	528	535	first strand
Strand 20	F	545	554	first strand
Strand 21	F	560	573	first strand

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There are 21 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	153	first strand
Strand 2	G	173	176	first strand
Strand 3	G	178	179	first strand
Strand 4	G	220	226	first strand
Strand 5	G	248	252	first strand
Strand 6	G	288	293	first strand
Strand 7	G	313	320	first strand
Strand 8	G	338	342	first strand
Strand 9	G	353	355	first strand
Strand 10	G	359	361	first strand
Strand 11	G	412	414	first strand
Strand 12	G	418	420	first strand
Strand 13	G	448	455	first strand
Strand 14	G	459	461	first strand
Strand 15	G	463	471	first strand
Strand 16	G	487	495	first strand
Strand 17	G	500	506	first strand
Strand 18	G	511	516	first strand
Strand 19	G	528	535	first strand
Strand 20	G	545	554	first strand
Strand 21	G	560	573	first strand

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There are 21 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	147	153	first strand
Strand 2	H	173	176	first strand
Strand 3	H	178	179	first strand
Strand 4	H	220	226	first strand
Strand 5	H	248	252	first strand
Strand 6	H	288	293	first strand
Strand 7	H	313	320	first strand
Strand 8	H	338	342	first strand
Strand 9	H	353	355	first strand
Strand 10	H	359	361	first strand
Strand 11	H	412	414	first strand
Strand 12	H	418	420	first strand
Strand 13	H	448	455	first strand
Strand 14	H	459	461	first strand
Strand 15	H	463	471	first strand
Strand 16	H	487	495	first strand
Strand 17	H	500	506	first strand
Strand 18	H	511	516	first strand
Strand 19	H	528	535	first strand
Strand 20	H	545	554	first strand
Strand 21	H	560	573	first strand

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1P8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
1P8J