Analysis of interatomic Contacts of Structural Units in PDB entry:
1P8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P8J entry

There are 16 chains in PDB entry 1P8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 109LEU 578
B
VAL 109GLU 576
C
VAL 109PRO 575
D
VAL 109PRO 575
E
VAL 109PRO 575
F
ASP 108PRO 575
G
VAL 109PRO 575
H
TYR 110PRO 575
J
ARG 802LYS 804
K
ARG 802LYS 804
L
ARG 802LYS 804
M
ARG 802LYS 804
N
ARG 802LYS 804
P
ARG 802LYS 804
Q
ARG 802LYS 804
R
ARG 802LYS 804
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 1P8J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
134 140Right-handed alpha
Helix 2
2
A
193 203Right-handed alpha
Helix 3
3
A
232 241Right-handed alpha
Helix 4
4
A
267 281Right-handed alpha
Helix 5
5
A
366 385Right-handed alpha
Helix 6
6
A
390 400Right-handed alpha
Helix 7
7
A
430 439Right-handed alpha
Helix 8
8
B
134 140Right-handed alpha
Helix 9
9
B
193 203Right-handed alpha
Helix 10
10
B
232 241Right-handed alpha
Helix 11
11
B
267 281Right-handed alpha
Helix 12
12
B
366 385Right-handed alpha
Helix 13
13
B
390 400Right-handed alpha
Helix 14
14
B
430 439Right-handed alpha
Helix 15
15
C
134 140Right-handed alpha
Helix 16
16
C
193 203Right-handed alpha
Helix 17
17
C
232 241Right-handed alpha
Helix 18
18
C
267 281Right-handed alpha
Helix 19
19
C
366 385Right-handed alpha
Helix 20
20
C
390 400Right-handed alpha
Helix 21
21
C
430 439Right-handed alpha
Helix 22
22
D
134 140Right-handed alpha
Helix 23
23
D
193 203Right-handed alpha
Helix 24
24
D
232 241Right-handed alpha
Helix 25
25
D
267 281Right-handed alpha
Helix 26
26
D
366 385Right-handed alpha
Helix 27
27
D
390 400Right-handed alpha
Helix 28
28
D
430 439Right-handed alpha
Helix 29
29
E
134 140Right-handed alpha
Helix 30
30
E
193 203Right-handed alpha
Helix 31
31
E
232 241Right-handed alpha
Helix 32
32
E
267 281Right-handed alpha
Helix 33
33
E
366 385Right-handed alpha
Helix 34
34
E
390 400Right-handed alpha
Helix 35
35
E
430 439Right-handed alpha
Helix 36
36
F
134 140Right-handed alpha
Helix 37
37
F
193 203Right-handed alpha
Helix 38
38
F
232 241Right-handed alpha
Helix 39
39
F
267 281Right-handed alpha
Helix 40
40
F
366 385Right-handed alpha
Helix 41
41
F
390 400Right-handed alpha
Helix 42
42
F
430 439Right-handed alpha
Helix 43
43
G
134 140Right-handed alpha
Helix 44
44
G
193 203Right-handed alpha
Helix 45
45
G
232 241Right-handed alpha
Helix 46
46
G
267 281Right-handed alpha
Helix 47
47
G
366 385Right-handed alpha
Helix 48
48
G
390 400Right-handed alpha
Helix 49
49
G
430 439Right-handed alpha
Helix 50
50
H
134 140Right-handed alpha
Helix 51
51
H
193 203Right-handed alpha
Helix 52
52
H
232 241Right-handed alpha
Helix 53
53
H
267 281Right-handed alpha
Helix 54
54
H
366 385Right-handed alpha
Helix 55
55
H
390 400Right-handed alpha
Helix 56
56
H
430 439Right-handed alpha
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There are 8 sheets in PDB entry 1P8J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 21 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
147 153first strand
Strand 2
A
173 176first strand
Strand 3
A
178 179first strand
Strand 4
A
220 226first strand
Strand 5
A
248 252first strand
Strand 6
A
288 293first strand
Strand 7
A
313 320first strand
Strand 8
A
338 342first strand
Strand 9
A
353 355first strand
Strand 10
A
359 361first strand
Strand 11
A
412 414first strand
Strand 12
A
418 420first strand
Strand 13
A
448 455first strand
Strand 14
A
459 461first strand
Strand 15
A
463 471first strand
Strand 16
A
487 495first strand
Strand 17
A
500 506first strand
Strand 18
A
511 516first strand
Strand 19
A
528 535first strand
Strand 20
A
545 554first strand
Strand 21
A
560 573first strand
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There are 21 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
147 153first strand
Strand 2
B
173 176first strand
Strand 3
B
178 179first strand
Strand 4
B
220 226first strand
Strand 5
B
248 252first strand
Strand 6
B
288 293first strand
Strand 7
B
313 320first strand
Strand 8
B
338 342first strand
Strand 9
B
353 355first strand
Strand 10
B
359 361first strand
Strand 11
B
412 414first strand
Strand 12
B
418 420first strand
Strand 13
B
448 455first strand
Strand 14
B
459 461first strand
Strand 15
B
463 471first strand
Strand 16
B
487 495first strand
Strand 17
B
500 506first strand
Strand 18
B
511 516first strand
Strand 19
B
528 535first strand
Strand 20
B
545 554first strand
Strand 21
B
560 573first strand
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There are 21 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
147 153first strand
Strand 2
C
173 176first strand
Strand 3
C
178 179first strand
Strand 4
C
220 226first strand
Strand 5
C
248 252first strand
Strand 6
C
288 293first strand
Strand 7
C
313 320first strand
Strand 8
C
338 342first strand
Strand 9
C
353 355first strand
Strand 10
C
359 361first strand
Strand 11
C
412 414first strand
Strand 12
C
418 420first strand
Strand 13
C
448 455first strand
Strand 14
C
459 461first strand
Strand 15
C
463 471first strand
Strand 16
C
487 495first strand
Strand 17
C
500 506first strand
Strand 18
C
511 516first strand
Strand 19
C
528 535first strand
Strand 20
C
545 554first strand
Strand 21
C
560 573first strand
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There are 21 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
147 153first strand
Strand 2
D
173 176first strand
Strand 3
D
178 179first strand
Strand 4
D
220 226first strand
Strand 5
D
248 252first strand
Strand 6
D
288 293first strand
Strand 7
D
313 320first strand
Strand 8
D
338 342first strand
Strand 9
D
353 355first strand
Strand 10
D
359 361first strand
Strand 11
D
412 414first strand
Strand 12
D
418 420first strand
Strand 13
D
448 455first strand
Strand 14
D
459 461first strand
Strand 15
D
463 471first strand
Strand 16
D
487 495first strand
Strand 17
D
500 506first strand
Strand 18
D
511 516first strand
Strand 19
D
528 535first strand
Strand 20
D
545 554first strand
Strand 21
D
560 573first strand
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There are 21 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
147 153first strand
Strand 2
E
173 176first strand
Strand 3
E
178 179first strand
Strand 4
E
220 226first strand
Strand 5
E
248 252first strand
Strand 6
E
288 293first strand
Strand 7
E
313 320first strand
Strand 8
E
338 342first strand
Strand 9
E
353 355first strand
Strand 10
E
359 361first strand
Strand 11
E
412 414first strand
Strand 12
E
418 420first strand
Strand 13
E
448 455first strand
Strand 14
E
459 461first strand
Strand 15
E
463 471first strand
Strand 16
E
487 495first strand
Strand 17
E
500 506first strand
Strand 18
E
511 516first strand
Strand 19
E
528 535first strand
Strand 20
E
545 554first strand
Strand 21
E
560 573first strand
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There are 21 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
147 153first strand
Strand 2
F
173 176first strand
Strand 3
F
178 179first strand
Strand 4
F
220 226first strand
Strand 5
F
248 252first strand
Strand 6
F
288 293first strand
Strand 7
F
313 320first strand
Strand 8
F
338 342first strand
Strand 9
F
353 355first strand
Strand 10
F
359 361first strand
Strand 11
F
412 414first strand
Strand 12
F
418 420first strand
Strand 13
F
448 455first strand
Strand 14
F
459 461first strand
Strand 15
F
463 471first strand
Strand 16
F
487 495first strand
Strand 17
F
500 506first strand
Strand 18
F
511 516first strand
Strand 19
F
528 535first strand
Strand 20
F
545 554first strand
Strand 21
F
560 573first strand
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There are 21 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
147 153first strand
Strand 2
G
173 176first strand
Strand 3
G
178 179first strand
Strand 4
G
220 226first strand
Strand 5
G
248 252first strand
Strand 6
G
288 293first strand
Strand 7
G
313 320first strand
Strand 8
G
338 342first strand
Strand 9
G
353 355first strand
Strand 10
G
359 361first strand
Strand 11
G
412 414first strand
Strand 12
G
418 420first strand
Strand 13
G
448 455first strand
Strand 14
G
459 461first strand
Strand 15
G
463 471first strand
Strand 16
G
487 495first strand
Strand 17
G
500 506first strand
Strand 18
G
511 516first strand
Strand 19
G
528 535first strand
Strand 20
G
545 554first strand
Strand 21
G
560 573first strand
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There are 21 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
147 153first strand
Strand 2
H
173 176first strand
Strand 3
H
178 179first strand
Strand 4
H
220 226first strand
Strand 5
H
248 252first strand
Strand 6
H
288 293first strand
Strand 7
H
313 320first strand
Strand 8
H
338 342first strand
Strand 9
H
353 355first strand
Strand 10
H
359 361first strand
Strand 11
H
412 414first strand
Strand 12
H
418 420first strand
Strand 13
H
448 455first strand
Strand 14
H
459 461first strand
Strand 15
H
463 471first strand
Strand 16
H
487 495first strand
Strand 17
H
500 506first strand
Strand 18
H
511 516first strand
Strand 19
H
528 535first strand
Strand 20
H
545 554first strand
Strand 21
H
560 573first strand
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