Analysis of interatomic Contacts of Structural Units in PDB entry:
1P8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P8M entry

There are 3 chains in PDB entry 1P8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6LEU 319
B
 LYS 6LEU 319
C
 LYS 6LEU 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 1P8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 25Right-handed 310
Helix 2
2
A
26 34Right-handed alpha
Helix 3
3
A
35 40Right-handed alpha
Helix 4
4
A
41 43Right-handed 310
Helix 5
5
A
69 90Right-handed alpha
Helix 6
6
A
100 102Right-handed 310
Helix 7
7
A
103 115Right-handed alpha
Helix 8
8
A
139 142Right-handed 310
Helix 9
9
A
143 149Right-handed alpha
Helix 10
10
A
150 153Right-handed 310
Helix 11
11
A
170 172Right-handed 310
Helix 12
12
A
183 193Right-handed alpha
Helix 13
13
A
200 207Right-handed alpha
Helix 14
14
A
207 221Right-handed alpha
Helix 15
15
A
234 236Right-handed 310
Helix 16
16
A
253 268Right-handed alpha
Helix 17
17
A
279 283Right-handed 310
Helix 18
18
A
285 304Right-handed alpha
Helix 19
19
B
23 25Right-handed 310
Helix 20
20
B
26 34Right-handed alpha
Helix 21
21
B
35 40Right-handed alpha
Helix 22
22
B
41 43Right-handed 310
Helix 23
23
B
69 90Right-handed alpha
Helix 24
24
B
100 102Right-handed 310
Helix 25
25
B
103 115Right-handed alpha
Helix 26
26
B
139 142Right-handed 310
Helix 27
27
B
143 149Right-handed alpha
Helix 28
28
B
150 153Right-handed 310
Helix 29
29
B
170 172Right-handed 310
Helix 30
30
B
183 193Right-handed alpha
Helix 31
31
B
200 207Right-handed alpha
Helix 32
32
B
207 221Right-handed alpha
Helix 33
33
B
234 236Right-handed 310
Helix 34
34
B
253 268Right-handed alpha
Helix 35
35
B
279 283Right-handed 310
Helix 36
36
B
285 304Right-handed alpha
Helix 37
37
C
23 25Right-handed 310
Helix 38
38
C
26 34Right-handed alpha
Helix 39
39
C
35 42Right-handed alpha
Helix 40
40
C
69 90Right-handed alpha
Helix 41
41
C
100 102Right-handed 310
Helix 42
42
C
103 115Right-handed alpha
Helix 43
43
C
139 142Right-handed 310
Helix 44
44
C
143 149Right-handed alpha
Helix 45
45
C
150 153Right-handed 310
Helix 46
46
C
170 172Right-handed 310
Helix 47
47
C
183 193Right-handed alpha
Helix 48
48
C
200 207Right-handed alpha
Helix 49
49
C
207 221Right-handed alpha
Helix 50
50
C
234 236Right-handed 310
Helix 51
51
C
253 268Right-handed alpha
Helix 52
52
C
279 283Right-handed 310
Helix 53
53
C
285 304Right-handed alpha
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There are 3 sheets in PDB entry 1P8M. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 52first strand
Strand 2
A
7 13parallel
Strand 3
A
93 98parallel
Strand 4
A
270 276parallel
Strand 5
A
227 232parallel
Strand 6
A
119 123parallel
Strand 7
A
174 179parallel
Strand 8
A
196 199parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 52first strand
Strand 2
B
7 13parallel
Strand 3
B
93 98parallel
Strand 4
B
270 276parallel
Strand 5
B
227 232parallel
Strand 6
B
119 123parallel
Strand 7
B
174 179parallel
Strand 8
B
196 199parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 52first strand
Strand 2
C
7 12parallel
Strand 3
C
93 97parallel
Strand 4
C
270 276parallel
Strand 5
C
227 232parallel
Strand 6
C
119 123parallel
Strand 7
C
174 179parallel
Strand 8
C
196 199parallel
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