Analysis of interatomic Contacts of Structural Units in PDB entry:
1P8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P8S entry

There are 3 chains in PDB entry 1P8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6LEU 319
B
 LYS 6LEU 319
C
 LYS 6LEU 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 1P8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 26Right-handed 310
Helix 2
2
A
27 32Right-handed alpha
Helix 3
3
A
35 41Right-handed alpha
Helix 4
4
A
69 90Right-handed alpha
Helix 5
5
A
100 102Right-handed 310
Helix 6
6
A
103 115Right-handed alpha
Helix 7
7
A
139 142Right-handed 310
Helix 8
8
A
143 149Right-handed alpha
Helix 9
9
A
170 172Right-handed 310
Helix 10
10
A
183 193Right-handed alpha
Helix 11
11
A
199 207Right-handed alpha
Helix 12
12
A
207 220Right-handed alpha
Helix 13
13
A
234 236Right-handed 310
Helix 14
14
A
253 268Right-handed alpha
Helix 15
15
A
279 283Right-handed 310
Helix 16
16
A
285 298Right-handed alpha
Helix 17
17
A
299 304Right-handed alpha
Helix 18
18
B
23 25Right-handed 310
Helix 19
19
B
26 34Right-handed alpha
Helix 20
20
B
35 41Right-handed alpha
Helix 21
21
B
69 90Right-handed alpha
Helix 22
22
B
100 102Right-handed 310
Helix 23
23
B
103 113Right-handed alpha
Helix 24
24
B
143 149Right-handed alpha
Helix 25
25
B
150 153Right-handed 310
Helix 26
26
B
183 193Right-handed alpha
Helix 27
27
B
200 206Right-handed alpha
Helix 28
28
B
206 220Right-handed alpha
Helix 29
29
B
234 236Right-handed 310
Helix 30
30
B
253 268Right-handed alpha
Helix 31
31
B
285 301Right-handed alpha
Helix 32
32
C
23 25Right-handed 310
Helix 33
33
C
26 35Right-handed alpha
Helix 34
34
C
35 41Right-handed alpha
Helix 35
35
C
69 89Right-handed alpha
Helix 36
36
C
100 102Right-handed 310
Helix 37
37
C
103 113Right-handed alpha
Helix 38
38
C
139 142Right-handed 310
Helix 39
39
C
143 149Right-handed alpha
Helix 40
40
C
183 193Right-handed alpha
Helix 41
41
C
201 206Right-handed alpha
Helix 42
42
C
206 221Right-handed alpha
Helix 43
43
C
234 236Right-handed 310
Helix 44
44
C
253 267Right-handed alpha
Helix 45
45
C
279 283Right-handed 310
Helix 46
46
C
285 303Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1P8S. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
46 47parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
94 98parallel
Strand 3
A
270 276parallel
Strand 4
A
227 232parallel
Strand 5
A
119 123parallel
Strand 6
A
174 177parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 52first strand
Strand 2
B
7 13parallel
Strand 3
B
93 98parallel
Strand 4
B
270 276parallel
Strand 5
B
227 232parallel
Strand 6
B
119 123parallel
Strand 7
B
174 179parallel
Strand 8
B
196 199parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 52first strand
Strand 2
C
7 13parallel
Strand 3
C
93 98parallel
Strand 4
C
270 276parallel
Strand 5
C
227 232parallel
Strand 6
C
119 123parallel
Strand 7
C
174 177parallel
Strand 8
C
196 198parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il