Analysis of interatomic Contacts of Structural Units in PDB entry:
1P8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P8V entry

There are 4 chains in PDB entry 1P8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1LEU 275
A
 ASP 277TYR 278
B
 GLU 1ASP 29
C
 ILE 1GLY 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1P8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 52Right-handed 310
Helix 2
2
A
210 212Right-handed 310
Helix 3
3
A
213 223Right-handed alpha
Helix 4
4
A
224 227Right-handed 310
Helix 5
5
A
235 239Right-handed 310
Helix 6
6
A
242 246Right-handed 310
Helix 7
7
A
247 251Right-handed 310
Helix 8
8
A
255 259Right-handed 310
Helix 9
9
B
10 14Right-handed 310
Helix 10
10
B
19 25Right-handed alpha
Helix 11
11
B
26 28Right-handed 310
Helix 12
12
C
41 44Right-handed 310
Helix 13
13
C
48 51Right-handed 310
Helix 14
14
C
55 57Right-handed 310
Helix 15
15
C
122 130Right-handed alpha
Helix 16
16
C
169 175Right-handed alpha
Helix 17
17
C
191 195Right-handed 310
Helix 18
18
C
246 258Right-handed alpha
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There are 5 sheets in PDB entry 1P8V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
12 16anti-parallel
Strand 3
A
35 37parallel
Strand 4
A
59 61parallel
Strand 5
A
81 83parallel
Strand 6
A
104 106parallel
Strand 7
A
128 130parallel
Strand 8
A
152 154parallel
Strand 9
A
176 178parallel
Strand 10
A
199 201parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
69 71parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
161 168anti-parallel
Strand 3
C
185 188anti-parallel
Strand 4
C
238 242anti-parallel
Strand 5
C
219 227anti-parallel
Strand 6
C
208 212anti-parallel
Strand 7
C
135 140anti-parallel
Strand 8
C
161 168anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 79first strand
Strand 2
C
59 63anti-parallel
Strand 3
C
15 20anti-parallel
Strand 4
C
25 32anti-parallel
Strand 5
C
37 40anti-parallel
Strand 6
C
101 105anti-parallel
Strand 7
C
81 86anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 47first strand
Strand 2
C
52 53anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il