Analysis of interatomic Contacts of Structural Units in PDB entry:
1PAX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PAX entry

There is 1 chain in PDB entry 1PAX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 662THR 1011
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 1PAX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
667 676Right-handed alpha
Helix 2
2
A
679 688Right-handed alpha
Helix 3
3
A
698 700Right-handed 310
Helix 4
4
A
703 721Right-handed alpha
Helix 5
5
A
726 739Right-handed alpha
Helix 6
6
A
755 779Right-handed alpha
Helix 7
7
A
789 795Right-handed alpha
Helix 8
8
A
809 820Right-handed alpha
Helix 9
9
A
824 826Right-handed 310
Helix 10
10
A
844 853Right-handed alpha
Helix 11
11
A
866 875Right-handed 310
Helix 12
12
A
886 888Right-handed 310
Helix 13
13
A
901 907Right-handed alpha
Helix 14
14
A
958 960Right-handed 310
Helix 15
15
A
994 996Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 1PAX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 803first strand
Strand 2
A
829 841anti-parallel
Strand 3
A
997 1009anti-parallel
Strand 4
A
916 925anti-parallel
Strand 5
A
857 864anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 897first strand
Strand 2
A
988 991anti-parallel
Strand 3
A
947 950anti-parallel
Strand 4
A
929 932parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 956first strand
Strand 2
A
974 976anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
962 964first strand
Strand 2
A
967 969anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il