Analysis of interatomic Contacts of Structural Units in PDB entry:
1PB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PB0 entry

There are 3 chains in PDB entry 1PB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 245
B
 MET 1LEU 245
C
 MET 1LEU 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 1PB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
50 55Right-handed alpha
Helix 3
3
A
56 59Right-handed 310
Helix 4
4
A
86 93Right-handed alpha
Helix 5
5
A
109 123Right-handed alpha
Helix 6
6
A
140 151Right-handed alpha
Helix 7
7
A
172 184Right-handed alpha
Helix 8
8
A
195 199Right-handed 310
Helix 9
9
A
202 212Right-handed alpha
Helix 10
10
A
215 222Right-handed 310
Helix 11
11
A
223 234Right-handed alpha
Helix 12
12
A
239 243Right-handed 310
Helix 13
13
B
19 31Right-handed alpha
Helix 14
14
B
50 55Right-handed alpha
Helix 15
15
B
56 59Right-handed 310
Helix 16
16
B
86 93Right-handed alpha
Helix 17
17
B
109 123Right-handed alpha
Helix 18
18
B
140 151Right-handed alpha
Helix 19
19
B
172 184Right-handed alpha
Helix 20
20
B
195 199Right-handed 310
Helix 21
21
B
202 210Right-handed alpha
Helix 22
22
B
215 222Right-handed 310
Helix 23
23
B
223 234Right-handed alpha
Helix 24
24
B
239 243Right-handed 310
Helix 25
25
C
19 31Right-handed alpha
Helix 26
26
C
50 55Right-handed alpha
Helix 27
27
C
56 59Right-handed 310
Helix 28
28
C
86 93Right-handed alpha
Helix 29
29
C
109 122Right-handed alpha
Helix 30
30
C
140 151Right-handed alpha
Helix 31
31
C
172 184Right-handed alpha
Helix 32
32
C
195 199Right-handed 310
Helix 33
33
C
202 212Right-handed alpha
Helix 34
34
C
215 222Right-handed 310
Helix 35
35
C
223 234Right-handed alpha
Helix 36
36
C
239 243Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 1PB0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
34 40parallel
Strand 3
A
66 75parallel
Strand 4
A
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
34 40parallel
Strand 3
A
66 75parallel
Strand 4
A
95 99parallel
Strand 5
A
128 129parallel
Strand 6
A
154 157parallel
Strand 7
A
187 189parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
34 40parallel
Strand 3
B
66 75parallel
Strand 4
B
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
34 40parallel
Strand 3
B
66 75parallel
Strand 4
B
95 99parallel
Strand 5
B
128 129parallel
Strand 6
B
154 157parallel
Strand 7
B
187 189parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
34 40parallel
Strand 3
C
66 75parallel
Strand 4
C
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
34 40parallel
Strand 3
C
66 75parallel
Strand 4
C
95 99parallel
Strand 5
C
128 129parallel
Strand 6
C
154 157parallel
Strand 7
C
187 189parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il