Analysis of interatomic Contacts of Structural Units in PDB entry:
1PBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PBP entry

There is 1 chain in PDB entry 1PBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1TYR 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1PBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 28Right-handed alpha
Helix 2
2
A
37 47Right-handed alpha
Helix 3
3
A
60 68Right-handed alpha
Helix 4
4
A
96 105Right-handed alpha
Helix 5
5
A
113 120Right-handed alpha
Helix 6
6
A
139 153Right-handed alpha
Helix 7
7
A
153 160Right-handed alpha
Helix 8
8
A
175 187Right-handed alpha
Helix 9
9
A
196 202Right-handed alpha
Helix 10
10
A
220 229Right-handed alpha
Helix 11
11
A
266 284Right-handed alpha
Helix 12
12
A
284 291Right-handed alpha
Helix 13
13
A
297 312Right-handed alpha
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There are 2 sheets in PDB entry 1PBP. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
208 210parallel
Strand 3
A
216 217anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
313 314parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il