Analysis of interatomic Contacts of Structural Units in PDB entry:
1PC3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PC3 entry

There are 2 chains in PDB entry 1PC3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 19SER 351
B
 VAL 19SER 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 1PC3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 53Right-handed alpha
Helix 2
2
A
64 74Right-handed alpha
Helix 3
3
A
87 94Right-handed alpha
Helix 4
4
A
123 132Right-handed alpha
Helix 5
5
A
140 147Right-handed alpha
Helix 6
6
A
166 180Right-handed alpha
Helix 7
7
A
206 218Right-handed alpha
Helix 8
8
A
229 236Right-handed alpha
Helix 9
9
A
254 263Right-handed alpha
Helix 10
10
A
302 317Right-handed alpha
Helix 11
11
A
318 321Right-handed 310
Helix 12
12
A
322 327Right-handed alpha
Helix 13
13
A
335 347Right-handed alpha
Helix 14
14
B
38 53Right-handed alpha
Helix 15
15
B
63 75Right-handed alpha
Helix 16
16
B
87 94Right-handed alpha
Helix 17
17
B
123 132Right-handed alpha
Helix 18
18
B
140 145Right-handed alpha
Helix 19
19
B
166 180Right-handed alpha
Helix 20
20
B
206 218Right-handed alpha
Helix 21
21
B
229 236Right-handed alpha
Helix 22
22
B
254 264Right-handed alpha
Helix 23
23
B
302 317Right-handed alpha
Helix 24
24
B
322 327Right-handed alpha
Helix 25
25
B
335 349Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1PC3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
28 34parallel
Strand 3
A
79 82parallel
Strand 4
A
289 297anti-parallel
Strand 5
A
97 111anti-parallel
Strand 6
A
221 226anti-parallel
Strand 7
A
158 159parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
28 34parallel
Strand 3
A
79 82parallel
Strand 4
A
289 297anti-parallel
Strand 5
A
97 111anti-parallel
Strand 6
A
239 240anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
242 244parallel
Strand 3
A
250 251anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
204 205parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
28 34parallel
Strand 3
B
79 82parallel
Strand 4
B
289 297anti-parallel
Strand 5
B
97 111anti-parallel
Strand 6
B
221 226anti-parallel
Strand 7
B
158 159parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
28 34parallel
Strand 3
B
79 82parallel
Strand 4
B
289 297anti-parallel
Strand 5
B
97 111anti-parallel
Strand 6
B
239 240anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
242 244parallel
Strand 3
B
250 251anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
204 205parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il