Analysis of interatomic Contacts of Structural Units in PDB entry:
1PCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PCJ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 1PCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 ALA 6GLY 107
X
 HIS 109PHE 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1PCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
10 14Right-handed 310
Helix 2
2
X
28 46Right-handed alpha
Helix 3
3
X
60 74Right-handed alpha
Helix 4
4
X
86 97Right-handed alpha
Helix 5
5
X
128 141Right-handed alpha
Helix 6
6
X
155 165Right-handed alpha
Helix 7
7
X
182 186Right-handed 310
Helix 8
8
X
187 196Right-handed alpha
Helix 9
9
X
219 222Right-handed 310
Helix 10
10
X
223 233Right-handed alpha
Helix 11
11
X
259 275Right-handed alpha
Helix 12
12
X
288 297Right-handed alpha
Helix 13
13
X
307 319Right-handed alpha
Helix 14
14
X
341 355Right-handed alpha
Helix 15
15
X
359 366Right-handed alpha
Helix 16
16
X
384 396Right-handed alpha
Helix 17
17
X
437 456Right-handed alpha
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There are 6 sheets in PDB entry 1PCJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
19 22first strand
Strand 2
X
114 121anti-parallel
Strand 3
X
124 125anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
19 22first strand
Strand 2
X
114 121anti-parallel
Strand 3
X
101 105anti-parallel
Strand 4
X
50 55parallel
Strand 5
X
78 84parallel
Strand 6
X
149 152parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
197 202first strand
Strand 2
X
173 178parallel
Strand 3
X
237 241parallel
Strand 4
X
248 252anti-parallel
Strand 5
X
257 258anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
300 304first strand
Strand 2
X
279 283parallel
Strand 3
X
322 324parallel
Strand 4
X
330 332anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
371 372first strand
Strand 2
X
428 435anti-parallel
Strand 3
X
376 379anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
371 372first strand
Strand 2
X
428 435anti-parallel
Strand 3
X
416 422anti-parallel
Strand 4
X
409 413anti-parallel
Strand 5
X
402 404anti-parallel
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