Analysis of interatomic Contacts of Structural Units in PDB entry:
1PD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PD2 entry

There are 2 chains in PDB entry 1PD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 MET 1LEU 199
2
 MET 1LEU 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1PD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
16 25Right-handed alpha
Helix 2
12
1
36 45Right-handed alpha
Helix 3
3
1
64 72Right-handed alpha
Helix 4
14
1
76 78Right-handed 310
Helix 5
15
1
82 101Right-handed alpha
Helix 6
6
1
111 122Right-handed alpha
Helix 7
17
1
124 135Right-handed alpha
Helix 8
18
1
148 163Right-handed alpha
Helix 9
19
1
172 183Right-handed alpha
Helix 10
20
1
185 193Right-handed alpha
Helix 11
11
2
16 24Right-handed alpha
Helix 12
12
2
36 45Right-handed alpha
Helix 13
13
2
64 71Right-handed alpha
Helix 14
14
2
76 78Right-handed 310
Helix 15
15
2
82 101Right-handed alpha
Helix 16
16
2
109 122Right-handed alpha
Helix 17
17
2
124 135Right-handed alpha
Helix 18
18
2
148 163Right-handed alpha
Helix 19
19
2
172 183Right-handed alpha
Helix 20
20
2
185 193Right-handed alpha
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There are 2 sheets in PDB entry 1PD2. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
30 34first strand
Strand 2
1
4 9parallel
Strand 3
1
53 56anti-parallel
Strand 4
1
59 62anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
30 34first strand
Strand 2
2
4 9parallel
Strand 3
2
53 56anti-parallel
Strand 4
2
59 62anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il