Analysis of interatomic Contacts of Structural Units in PDB entry:
1PF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PF6 entry

There is 1 chain in PDB entry 1PF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1PF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 73Right-handed alpha
Helix 2
2
A
110 114Right-handed alpha
Helix 3
3
A
122 143Right-handed alpha
Helix 4
4
A
191 195Right-handed 310
Helix 5
5
A
196 201Right-handed alpha
Helix 6
6
A
207 224Right-handed alpha
Helix 7
7
A
233 238Right-handed alpha
Helix 8
8
A
239 243Right-handed 310
Helix 9
9
A
253 257Right-handed 310
Helix 10
10
A
260 264Right-handed 310
Helix 11
11
A
278 283Right-handed alpha
Helix 12
12
A
291 297Right-handed alpha
Helix 13
13
A
305 312Right-handed alpha
Helix 14
14
A
341 349Right-handed alpha
Helix 15
15
A
354 359Right-handed alpha
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There are 3 sheets in PDB entry 1PF6. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
33 36anti-parallel
Strand 3
A
45 50anti-parallel
Strand 4
A
99 104anti-parallel
Strand 5
A
81 85anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
156 157anti-parallel
Strand 3
A
163 164anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
172 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il