Analysis of interatomic Contacts of Structural Units in PDB entry:
1PGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PGI entry

There is 1 chain in PDB entry 1PGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 UNK 1UNK 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1PGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A1
A
4 10Right-handed alpha
Helix 2
A2
A
42 53Right-handed alpha
Helix 3
A3
A
73 82Right-handed alpha
Helix 4
A4
A
99 105Right-handed alpha
Helix 5
A5
A
127 142Right-handed alpha
Helix 6
A6
A
186 205Right-handed alpha
Helix 7
A7
A
223 232Right-handed alpha
Helix 8
A8
A
241 247Right-handed alpha
Helix 9
A9
A
263 270Right-handed alpha
Helix 10
A10
A
300 316Right-handed alpha
Helix 11
A11
A
342 347Right-handed alpha
Helix 12
A12
A
367 377Right-handed alpha
Helix 13
A13
A
400 406Right-handed alpha
Helix 14
A14
A
431 435Right-handed alpha
Helix 15
A15
A
442 452Right-handed alpha
Helix 16
A16
A
472 483Right-handed alpha
Helix 17
A17
A
491 498Right-handed alpha
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There are 2 sheets in PDB entry 1PGI. Click on sheet of interest to get list of strands forming it: S1, S2,

There are 6 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
63 67parallel
Strand 3
A
112 117parallel
Strand 4
A
172 178parallel
Strand 5
A
459 463parallel
Strand 6
A
253 255parallel
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There are 4 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
353 355parallel
Strand 3
A
391 394parallel
Strand 4
A
412 413parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il