Analysis of interatomic Contacts of Structural Units in PDB entry:
1PGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PGJ entry

There are 2 chains in PDB entry 1PGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLN 478
B
 SER 1GLN 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 1PGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
11 22Right-handed alpha
Helix 2
B
A
34 43Right-handed alpha
Helix 3
C
A
59 65Right-handed alpha
Helix 4
D
A
80 92Right-handed alpha
Helix 5
E
A
107 118Right-handed alpha
Helix 6
F
A
132 138Right-handed alpha
Helix 7
G
A
148 161Right-handed alpha
Helix 8
H
A
180 208Right-handed alpha
Helix 9
I
A
213 225Right-handed alpha
Helix 10
J
A
232 242Right-handed alpha
Helix 11
J*
A
251 254Right-handed 310
Helix 12
K
A
264 275Right-handed alpha
Helix 13
L
A
280 293Right-handed alpha
Helix 14
M
A
295 304Right-handed alpha
Helix 15
N
A
324 355Right-handed alpha
Helix 16
O
A
361 366Right-handed alpha
Helix 17
P
A
379 388Right-handed alpha
Helix 18
Q
A
400 420Right-handed alpha
Helix 19
R
A
426 438Right-handed alpha
Helix 20
S
A
445 457Right-handed alpha
Helix 21
AA
B
11 22Right-handed alpha
Helix 22
BB
B
34 43Right-handed alpha
Helix 23
CC
B
59 65Right-handed alpha
Helix 24
DD
B
80 92Right-handed alpha
Helix 25
EE
B
107 119Right-handed alpha
Helix 26
FF
B
132 138Right-handed alpha
Helix 27
GG
B
148 161Right-handed alpha
Helix 28
HH
B
180 208Right-handed alpha
Helix 29
II
B
213 225Right-handed alpha
Helix 30
JJ
B
232 242Right-handed alpha
Helix 31
JJ*
B
251 254Right-handed 310
Helix 32
KK
B
264 275Right-handed alpha
Helix 33
LL
B
280 293Right-handed alpha
Helix 34
MM
B
295 304Right-handed alpha
Helix 35
NN
B
324 355Right-handed alpha
Helix 36
OO
B
361 366Right-handed alpha
Helix 37
PP
B
379 388Right-handed alpha
Helix 38
QQ*
B
395 398Right-handed 310
Helix 39
QQ
B
400 420Right-handed alpha
Helix 40
RR
B
426 438Right-handed alpha
Helix 41
SS
B
445 457Right-handed alpha
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There are 2 sheets in PDB entry 1PGJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
27 30parallel
Strand 3
A
4 7parallel
Strand 4
A
71 74parallel
Strand 5
A
98 101parallel
Strand 6
A
123 130parallel
Strand 7
A
141 146anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
27 30parallel
Strand 3
B
4 7parallel
Strand 4
B
71 74parallel
Strand 5
B
98 101parallel
Strand 6
B
123 130parallel
Strand 7
B
141 146anti-parallel
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