Analysis of interatomic Contacts of Structural Units in PDB entry:
1PJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PJ3 entry

There are 4 chains in PDB entry 1PJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 21PRO 573
B
 ILE 1021PRO 1573
C
 ILE 2021PRO 2573
D
 ILE 3021PRO 3573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are134 helices in PDB entry 1PJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 31Right-handed alpha
Helix 2
2
A
36 40Right-handed 310
Helix 3
3
A
41 48Right-handed alpha
Helix 4
4
A
60 75Right-handed alpha
Helix 5
5
A
77 90Right-handed alpha
Helix 6
6
A
92 103Right-handed alpha
Helix 7
7
A
103 112Right-handed alpha
Helix 8
8
A
114 122Right-handed alpha
Helix 9
9
A
122 127Right-handed alpha
Helix 10
10
A
138 140Right-handed 310
Helix 11
11
A
142 148Right-handed alpha
Helix 12
12
A
172 176Right-handed 310
Helix 13
13
A
177 192Right-handed alpha
Helix 14
14
A
194 196Right-handed 310
Helix 15
15
A
211 215Right-handed 310
Helix 16
16
A
228 247Right-handed alpha
Helix 17
17
A
258 270Right-handed alpha
Helix 18
18
A
278 299Right-handed alpha
Helix 19
19
A
301 305Right-handed 310
Helix 20
20
A
313 330Right-handed alpha
Helix 21
21
A
333 340Right-handed alpha
Helix 22
22
A
362 366Right-handed 310
Helix 23
23
A
376 385Right-handed alpha
Helix 24
24
A
400 411Right-handed alpha
Helix 25
25
A
422 426Right-handed 310
Helix 26
26
A
429 437Right-handed alpha
Helix 27
27
A
466 469Right-handed 310
Helix 28
28
A
470 481Right-handed alpha
Helix 29
29
A
487 500Right-handed alpha
Helix 30
30
A
503 509Right-handed alpha
Helix 31
31
A
515 517Right-handed 310
Helix 32
32
A
518 537Right-handed alpha
Helix 33
33
A
548 556Right-handed alpha
Helix 34
34
B
1026 1031Right-handed alpha
Helix 35
35
B
1036 1040Right-handed 310
Helix 36
36
B
1041 1048Right-handed alpha
Helix 37
37
B
1060 1074Right-handed alpha
Helix 38
38
B
1077 1090Right-handed alpha
Helix 39
39
B
1092 1103Right-handed alpha
Helix 40
40
B
1103 1112Right-handed alpha
Helix 41
41
B
1114 1122Right-handed alpha
Helix 42
42
B
1122 1127Right-handed alpha
Helix 43
43
B
1138 1140Right-handed 310
Helix 44
44
B
1142 1148Right-handed alpha
Helix 45
45
B
1166 1170Right-handed 310
Helix 46
46
B
1172 1176Right-handed 310
Helix 47
47
B
1177 1192Right-handed alpha
Helix 48
48
B
1194 1196Right-handed 310
Helix 49
49
B
1209 1214Right-handed alpha
Helix 50
50
B
1228 1247Right-handed alpha
Helix 51
51
B
1258 1270Right-handed alpha
Helix 52
52
B
1280 1299Right-handed alpha
Helix 53
53
B
1301 1305Right-handed 310
Helix 54
54
B
1313 1329Right-handed alpha
Helix 55
55
B
1333 1340Right-handed alpha
Helix 56
56
B
1362 1366Right-handed 310
Helix 57
57
B
1376 1385Right-handed alpha
Helix 58
58
B
1400 1411Right-handed alpha
Helix 59
59
B
1422 1426Right-handed 310
Helix 60
60
B
1429 1437Right-handed alpha
Helix 61
61
B
1466 1469Right-handed 310
Helix 62
62
B
1470 1481Right-handed alpha
Helix 63
63
B
1487 1500Right-handed alpha
Helix 64
64
B
1503 1510Right-handed alpha
Helix 65
65
B
1515 1517Right-handed 310
Helix 66
66
B
1518 1537Right-handed alpha
Helix 67
67
B
1548 1556Right-handed alpha
Helix 68
68
C
2026 2031Right-handed alpha
Helix 69
69
C
2036 2040Right-handed 310
Helix 70
70
C
2041 2048Right-handed alpha
Helix 71
71
C
2060 2074Right-handed alpha
Helix 72
72
C
2077 2090Right-handed alpha
Helix 73
73
C
2092 2103Right-handed alpha
Helix 74
74
C
2103 2112Right-handed alpha
Helix 75
75
C
2114 2122Right-handed alpha
Helix 76
76
C
2122 2127Right-handed alpha
Helix 77
77
C
2138 2140Right-handed 310
Helix 78
78
C
2142 2148Right-handed alpha
Helix 79
79
C
2166 2170Right-handed 310
Helix 80
80
C
2172 2176Right-handed 310
Helix 81
81
C
2177 2192Right-handed alpha
Helix 82
82
C
2194 2196Right-handed 310
Helix 83
83
C
2209 2214Right-handed alpha
Helix 84
84
C
2228 2247Right-handed alpha
Helix 85
85
C
2258 2270Right-handed alpha
Helix 86
86
C
2278 2299Right-handed alpha
Helix 87
87
C
2301 2305Right-handed 310
Helix 88
88
C
2313 2330Right-handed alpha
Helix 89
89
C
2333 2339Right-handed alpha
Helix 90
90
C
2362 2366Right-handed 310
Helix 91
91
C
2376 2385Right-handed alpha
Helix 92
92
C
2400 2411Right-handed alpha
Helix 93
93
C
2422 2426Right-handed 310
Helix 94
94
C
2429 2437Right-handed alpha
Helix 95
95
C
2466 2469Right-handed 310
Helix 96
96
C
2470 2481Right-handed alpha
Helix 97
97
C
2487 2500Right-handed alpha
Helix 98
98
C
2503 2510Right-handed alpha
Helix 99
99
C
2515 2517Right-handed 310
Helix 100
100
C
2518 2537Right-handed alpha
Helix 101
101
C
2548 2556Right-handed alpha
Helix 102
102
D
3026 3031Right-handed alpha
Helix 103
103
D
3036 3040Right-handed 310
Helix 104
104
D
3041 3048Right-handed alpha
Helix 105
105
D
3060 3075Right-handed alpha
Helix 106
106
D
3077 3090Right-handed alpha
Helix 107
107
D
3092 3103Right-handed alpha
Helix 108
108
D
3103 3112Right-handed alpha
Helix 109
109
D
3114 3122Right-handed alpha
Helix 110
110
D
3122 3127Right-handed alpha
Helix 111
111
D
3138 3140Right-handed 310
Helix 112
112
D
3142 3148Right-handed alpha
Helix 113
113
D
3172 3176Right-handed 310
Helix 114
114
D
3177 3192Right-handed alpha
Helix 115
115
D
3194 3196Right-handed 310
Helix 116
116
D
3209 3214Right-handed alpha
Helix 117
117
D
3228 3247Right-handed alpha
Helix 118
118
D
3258 3270Right-handed alpha
Helix 119
119
D
3280 3299Right-handed alpha
Helix 120
120
D
3301 3305Right-handed 310
Helix 121
121
D
3313 3330Right-handed alpha
Helix 122
122
D
3333 3339Right-handed alpha
Helix 123
123
D
3362 3366Right-handed 310
Helix 124
124
D
3376 3385Right-handed alpha
Helix 125
125
D
3400 3411Right-handed alpha
Helix 126
126
D
3422 3426Right-handed 310
Helix 127
127
D
3429 3437Right-handed alpha
Helix 128
128
D
3466 3469Right-handed 310
Helix 129
129
D
3470 3481Right-handed alpha
Helix 130
130
D
3487 3500Right-handed alpha
Helix 131
131
D
3503 3510Right-handed alpha
Helix 132
132
D
3515 3517Right-handed 310
Helix 133
133
D
3518 3537Right-handed alpha
Helix 134
134
D
3548 3556Right-handed alpha
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There are 12 sheets in PDB entry 1PJ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
198 204parallel
Strand 3
A
157 161parallel
Strand 4
A
251 254parallel
Strand 5
A
275 277parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
341 345anti-parallel
Strand 3
A
307 310parallel
Strand 4
A
388 391parallel
Strand 5
A
415 418parallel
Strand 6
A
442 445parallel
Strand 7
A
463 464parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 453first strand
Strand 2
A
459 460anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1133 1136first strand
Strand 2
B
1198 1204parallel
Strand 3
B
1157 1161parallel
Strand 4
B
1251 1254parallel
Strand 5
B
1275 1277parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1348 1349first strand
Strand 2
B
1341 1345anti-parallel
Strand 3
B
1307 1310parallel
Strand 4
B
1388 1391parallel
Strand 5
B
1415 1418parallel
Strand 6
B
1442 1445parallel
Strand 7
B
1463 1464parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1452 1453first strand
Strand 2
B
1459 1460anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2133 2136first strand
Strand 2
C
2198 2204parallel
Strand 3
C
2157 2161parallel
Strand 4
C
2251 2254parallel
Strand 5
C
2275 2277parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2348 2349first strand
Strand 2
C
2341 2345anti-parallel
Strand 3
C
2307 2310parallel
Strand 4
C
2388 2391parallel
Strand 5
C
2415 2418parallel
Strand 6
C
2442 2445parallel
Strand 7
C
2463 2464parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2452 2453first strand
Strand 2
C
2459 2460anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3133 3136first strand
Strand 2
D
3198 3204parallel
Strand 3
D
3157 3161parallel
Strand 4
D
3251 3254parallel
Strand 5
D
3274 3277parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3348 3349first strand
Strand 2
D
3341 3345anti-parallel
Strand 3
D
3307 3310parallel
Strand 4
D
3388 3391parallel
Strand 5
D
3415 3418parallel
Strand 6
D
3442 3445parallel
Strand 7
D
3463 3464parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3452 3453first strand
Strand 2
D
3459 3460anti-parallel
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