Analysis of interatomic Contacts of Structural Units in PDB entry:
1PJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PJ5 entry

There is 1 chain in PDB entry 1PJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4GLY 830
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1PJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
44 48Right-handed 310
Helix 3
3
A
59 76Right-handed alpha
Helix 4
4
A
95 113Right-handed alpha
Helix 5
5
A
120 128Right-handed alpha
Helix 6
6
A
132 136Right-handed 310
Helix 7
7
A
149 164Right-handed alpha
Helix 8
8
A
203 205Right-handed 310
Helix 9
9
A
206 213Right-handed alpha
Helix 10
10
A
233 237Right-handed 310
Helix 11
11
A
254 256Right-handed 310
Helix 12
12
A
280 284Right-handed 310
Helix 13
13
A
288 292Right-handed 310
Helix 14
14
A
304 319Right-handed alpha
Helix 15
15
A
320 325Right-handed 310
Helix 16
16
A
361 363Right-handed 310
Helix 17
17
A
364 379Right-handed alpha
Helix 18
18
A
389 393Right-handed 310
Helix 19
19
A
394 398Right-handed 310
Helix 20
20
A
399 413Right-handed alpha
Helix 21
21
A
435 442Right-handed alpha
Helix 22
22
A
460 468Right-handed 310
Helix 23
23
A
469 473Right-handed 310
Helix 24
24
A
478 483Right-handed alpha
Helix 25
25
A
487 499Right-handed alpha
Helix 26
26
A
517 526Right-handed alpha
Helix 27
27
A
569 587Right-handed alpha
Helix 28
28
A
611 617Right-handed alpha
Helix 29
29
A
663 678Right-handed alpha
Helix 30
30
A
679 681Right-handed 310
Helix 31
31
A
686 697Right-handed alpha
Helix 32
32
A
717 721Right-handed 310
Helix 33
33
A
730 735Right-handed alpha
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There are 9 sheets in PDB entry 1PJ5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
31 34parallel
Strand 3
A
7 10parallel
Strand 4
A
198 201parallel
Strand 5
A
354 358parallel
Strand 6
A
344 347anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
146 148anti-parallel
Strand 3
A
84 85anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
81 82anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
89 93anti-parallel
Strand 4
A
250 253parallel
Strand 5
A
258 263anti-parallel
Strand 6
A
266 271anti-parallel
Strand 7
A
221 230anti-parallel
Strand 8
A
327 337anti-parallel
Strand 9
A
300 301anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 180first strand
Strand 2
A
183 189anti-parallel
Strand 3
A
192 195anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 449first strand
Strand 2
A
452 458anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
634 639first strand
Strand 2
A
642 647anti-parallel
Strand 3
A
656 662anti-parallel
Strand 4
A
602 608anti-parallel
Strand 5
A
501 504anti-parallel
Strand 6
A
683 685parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 543first strand
Strand 2
A
549 559anti-parallel
Strand 3
A
562 566anti-parallel
Strand 4
A
510 514anti-parallel
Strand 5
A
594 597anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
769 773first strand
Strand 2
A
763 766anti-parallel
Strand 3
A
801 806anti-parallel
Strand 4
A
809 816anti-parallel
Strand 5
A
744 751anti-parallel
Strand 6
A
785 793anti-parallel
Strand 7
A
777 780anti-parallel
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