Analysis of interatomic Contacts of Structural Units in PDB entry:
1PJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PJA entry

There is 1 chain in PDB entry 1PJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 35SER 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1PJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 51Right-handed 310
Helix 2
2
A
52 63Right-handed alpha
Helix 3
3
A
76 81Right-handed 310
Helix 4
4
A
82 101Right-handed alpha
Helix 5
5
A
111 124Right-handed alpha
Helix 6
6
A
146 153Right-handed alpha
Helix 7
7
A
157 166Right-handed alpha
Helix 8
8
A
169 173Right-handed 310
Helix 9
9
A
174 179Right-handed 310
Helix 10
10
A
184 192Right-handed alpha
Helix 11
11
A
194 199Right-handed alpha
Helix 12
12
A
206 215Right-handed alpha
Helix 13
13
A
233 239Right-handed 310
Helix 14
14
A
250 253Right-handed 310
Helix 15
15
A
254 259Right-handed alpha
Helix 16
16
A
263 270Right-handed alpha
Helix 17
17
A
289 297Right-handed alpha
Helix 18
18
A
298 301Right-handed 310
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There are 2 sheets in PDB entry 1PJA. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
39 42parallel
Strand 3
A
105 110parallel
Strand 4
A
129 135parallel
Strand 5
A
219 224parallel
Strand 6
A
273 277parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
248 249anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il