Analysis of interatomic Contacts of Structural Units in PDB entry:
1PJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PJB entry

There is 1 chain in PDB entry 1PJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1PJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 27Right-handed alpha
Helix 2
2
A
41 43Right-handed 310
Helix 3
3
A
47 53Right-handed alpha
Helix 4
4
A
61 65Right-handed alpha
Helix 5
5
A
78 83Right-handed 310
Helix 6
6
A
96 98Right-handed 310
Helix 7
7
A
100 109Right-handed alpha
Helix 8
8
A
116 118Right-handed 310
Helix 9
9
A
130 147Right-handed alpha
Helix 10
10
A
150 152Right-handed 310
Helix 11
11
A
177 189Right-handed alpha
Helix 12
12
A
200 213Right-handed alpha
Helix 13
13
A
221 230Right-handed alpha
Helix 14
14
A
251 256Right-handed alpha
Helix 15
15
A
282 284Right-handed 310
Helix 16
16
A
300 332Right-handed 310
Helix 17
17
A
335 340Right-handed alpha
Helix 18
18
A
351 356Right-handed alpha
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There are 3 sheets in PDB entry 1PJB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
32 36parallel
Strand 3
A
56 58parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
89 92parallel
Strand 3
A
112 115parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 289first strand
Strand 2
A
292 295anti-parallel
Strand 3
A
262 265parallel
Strand 4
A
233 236parallel
Strand 5
A
169 173parallel
Strand 6
A
192 197parallel
Strand 7
A
215 218parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il