Analysis of interatomic Contacts of Structural Units in PDB entry:
1PJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PJH entry

There are 3 chains in PDB entry 1PJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5GLN 270
B
 GLU 4GLN 270
C
 ILE 5GLN 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 1PJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 30Right-handed 310
Helix 2
2
A
34 51Right-handed alpha
Helix 3
3
A
71 77Right-handed alpha
Helix 4
4
A
88 97Right-handed alpha
Helix 5
5
A
97 111Right-handed alpha
Helix 6
6
A
125 134Right-handed alpha
Helix 7
7
A
149 154Right-handed alpha
Helix 8
8
A
160 170Right-handed alpha
Helix 9
9
A
170 180Right-handed alpha
Helix 10
10
A
186 192Right-handed alpha
Helix 11
11
A
205 222Right-handed alpha
Helix 12
12
A
225 238Right-handed alpha
Helix 13
13
A
240 262Right-handed alpha
Helix 14
14
A
262 269Right-handed alpha
Helix 15
15
B
26 30Right-handed 310
Helix 16
16
B
34 51Right-handed alpha
Helix 17
17
B
71 77Right-handed alpha
Helix 18
18
B
88 97Right-handed alpha
Helix 19
19
B
97 111Right-handed alpha
Helix 20
20
B
125 134Right-handed alpha
Helix 21
21
B
149 154Right-handed alpha
Helix 22
22
B
160 170Right-handed alpha
Helix 23
23
B
170 180Right-handed alpha
Helix 24
24
B
186 192Right-handed alpha
Helix 25
25
B
205 221Right-handed alpha
Helix 26
26
B
225 238Right-handed alpha
Helix 27
27
B
240 262Right-handed alpha
Helix 28
28
B
262 268Right-handed alpha
Helix 29
29
C
26 30Right-handed 310
Helix 30
30
C
34 51Right-handed alpha
Helix 31
31
C
71 76Right-handed alpha
Helix 32
32
C
88 97Right-handed alpha
Helix 33
33
C
97 111Right-handed alpha
Helix 34
34
C
125 134Right-handed alpha
Helix 35
35
C
149 154Right-handed alpha
Helix 36
36
C
160 170Right-handed alpha
Helix 37
37
C
170 180Right-handed alpha
Helix 38
38
C
186 192Right-handed alpha
Helix 39
39
C
205 222Right-handed alpha
Helix 40
40
C
225 238Right-handed alpha
Helix 41
41
C
240 262Right-handed alpha
Helix 42
42
C
262 269Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1PJH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
56 60parallel
Strand 4
A
114 119parallel
Strand 5
A
136 139parallel
Strand 6
A
197 198parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
145 147parallel
Strand 3
A
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 16first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
56 60parallel
Strand 4
B
114 119parallel
Strand 5
B
136 139parallel
Strand 6
B
195 198parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
145 147parallel
Strand 3
B
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 16first strand
Strand 2
C
19 24anti-parallel
Strand 3
C
56 60parallel
Strand 4
C
114 119parallel
Strand 5
C
136 139parallel
Strand 6
C
197 198parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 124first strand
Strand 2
C
145 147parallel
Strand 3
C
184 185anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il