Analysis of interatomic Contacts of Structural Units in PDB entry:
1PJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PJL entry

There are 8 chains in PDB entry 1PJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23PRO 573
B
 GLU 1023PRO 1573
C
 GLU 2023PRO 2573
D
 GLU 3023PRO 3573
E
 GLU 4023PRO 4573
F
 GLU 5023PRO 5573
G
 GLU 6023PRO 6573
H
 GLU 7023PRO 7573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are255 helices in PDB entry 1PJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 31Right-handed alpha
Helix 2
2
A
36 40Right-handed 310
Helix 3
3
A
41 49Right-handed alpha
Helix 4
4
A
60 74Right-handed alpha
Helix 5
5
A
77 90Right-handed alpha
Helix 6
6
A
92 112Right-handed alpha
Helix 7
7
A
114 123Right-handed alpha
Helix 8
8
A
138 140Right-handed 310
Helix 9
9
A
142 148Right-handed alpha
Helix 10
10
A
166 170Right-handed 310
Helix 11
11
A
172 176Right-handed 310
Helix 12
12
A
177 190Right-handed alpha
Helix 13
13
A
194 196Right-handed 310
Helix 14
14
A
209 215Right-handed alpha
Helix 15
15
A
228 247Right-handed alpha
Helix 16
16
A
258 270Right-handed alpha
Helix 17
17
A
280 299Right-handed alpha
Helix 18
18
A
301 305Right-handed 310
Helix 19
19
A
314 330Right-handed alpha
Helix 20
20
A
333 339Right-handed alpha
Helix 21
21
A
362 366Right-handed 310
Helix 22
22
A
376 385Right-handed alpha
Helix 23
23
A
400 411Right-handed alpha
Helix 24
24
A
429 435Right-handed alpha
Helix 25
25
A
436 438Right-handed 310
Helix 26
26
A
466 469Right-handed 310
Helix 27
27
A
470 481Right-handed alpha
Helix 28
28
A
487 500Right-handed alpha
Helix 29
29
A
503 510Right-handed alpha
Helix 30
30
A
515 517Right-handed 310
Helix 31
31
A
518 537Right-handed alpha
Helix 32
32
A
548 556Right-handed alpha
Helix 33
33
B
1025 1031Right-handed alpha
Helix 34
34
B
1036 1040Right-handed 310
Helix 35
35
B
1041 1048Right-handed alpha
Helix 36
36
B
1060 1074Right-handed alpha
Helix 37
37
B
1077 1090Right-handed alpha
Helix 38
38
B
1092 1103Right-handed alpha
Helix 39
39
B
1103 1112Right-handed alpha
Helix 40
40
B
1115 1123Right-handed alpha
Helix 41
41
B
1136 1140Right-handed 310
Helix 42
42
B
1142 1148Right-handed alpha
Helix 43
43
B
1166 1170Right-handed 310
Helix 44
44
B
1172 1176Right-handed 310
Helix 45
45
B
1177 1192Right-handed alpha
Helix 46
46
B
1194 1196Right-handed 310
Helix 47
47
B
1209 1214Right-handed alpha
Helix 48
48
B
1229 1247Right-handed alpha
Helix 49
49
B
1259 1271Right-handed alpha
Helix 50
50
B
1280 1297Right-handed alpha
Helix 51
51
B
1301 1305Right-handed 310
Helix 52
52
B
1314 1330Right-handed alpha
Helix 53
53
B
1333 1340Right-handed alpha
Helix 54
54
B
1362 1366Right-handed 310
Helix 55
55
B
1376 1385Right-handed alpha
Helix 56
56
B
1400 1411Right-handed alpha
Helix 57
57
B
1429 1435Right-handed alpha
Helix 58
58
B
1436 1438Right-handed 310
Helix 59
59
B
1466 1469Right-handed 310
Helix 60
60
B
1470 1481Right-handed alpha
Helix 61
61
B
1487 1500Right-handed alpha
Helix 62
62
B
1503 1510Right-handed alpha
Helix 63
63
B
1515 1517Right-handed 310
Helix 64
64
B
1518 1537Right-handed alpha
Helix 65
65
B
1548 1556Right-handed alpha
Helix 66
66
C
2025 2031Right-handed alpha
Helix 67
67
C
2036 2040Right-handed 310
Helix 68
68
C
2041 2048Right-handed alpha
Helix 69
69
C
2060 2073Right-handed alpha
Helix 70
70
C
2077 2086Right-handed alpha
Helix 71
71
C
2092 2103Right-handed alpha
Helix 72
72
C
2103 2112Right-handed alpha
Helix 73
73
C
2114 2123Right-handed alpha
Helix 74
74
C
2138 2140Right-handed 310
Helix 75
75
C
2142 2148Right-handed alpha
Helix 76
76
C
2166 2170Right-handed 310
Helix 77
77
C
2172 2176Right-handed 310
Helix 78
78
C
2177 2192Right-handed alpha
Helix 79
79
C
2209 2214Right-handed alpha
Helix 80
80
C
2228 2247Right-handed alpha
Helix 81
81
C
2259 2271Right-handed alpha
Helix 82
82
C
2280 2299Right-handed alpha
Helix 83
83
C
2301 2305Right-handed 310
Helix 84
84
C
2314 2329Right-handed alpha
Helix 85
85
C
2333 2339Right-handed alpha
Helix 86
86
C
2362 2366Right-handed 310
Helix 87
87
C
2376 2385Right-handed alpha
Helix 88
88
C
2400 2411Right-handed alpha
Helix 89
89
C
2429 2436Right-handed alpha
Helix 90
90
C
2466 2469Right-handed 310
Helix 91
91
C
2470 2481Right-handed alpha
Helix 92
92
C
2487 2500Right-handed alpha
Helix 93
93
C
2503 2510Right-handed alpha
Helix 94
94
C
2515 2517Right-handed 310
Helix 95
95
C
2518 2537Right-handed alpha
Helix 96
96
C
2548 2557Right-handed alpha
Helix 97
97
D
3025 3031Right-handed alpha
Helix 98
98
D
3036 3040Right-handed 310
Helix 99
99
D
3041 3048Right-handed alpha
Helix 100
100
D
3060 3074Right-handed alpha
Helix 101
101
D
3077 3090Right-handed alpha
Helix 102
102
D
3092 3101Right-handed alpha
Helix 103
103
D
3103 3112Right-handed alpha
Helix 104
104
D
3114 3123Right-handed alpha
Helix 105
105
D
3136 3140Right-handed 310
Helix 106
106
D
3142 3149Right-handed alpha
Helix 107
107
D
3166 3170Right-handed 310
Helix 108
108
D
3172 3176Right-handed 310
Helix 109
109
D
3177 3192Right-handed alpha
Helix 110
110
D
3194 3196Right-handed 310
Helix 111
111
D
3209 3214Right-handed alpha
Helix 112
112
D
3229 3247Right-handed alpha
Helix 113
113
D
3258 3271Right-handed alpha
Helix 114
114
D
3278 3299Right-handed alpha
Helix 115
115
D
3301 3305Right-handed 310
Helix 116
116
D
3314 3328Right-handed alpha
Helix 117
117
D
3333 3338Right-handed alpha
Helix 118
118
D
3362 3366Right-handed 310
Helix 119
119
D
3376 3385Right-handed alpha
Helix 120
120
D
3400 3411Right-handed alpha
Helix 121
121
D
3431 3436Right-handed alpha
Helix 122
122
D
3466 3469Right-handed 310
Helix 123
123
D
3470 3481Right-handed alpha
Helix 124
124
D
3487 3500Right-handed alpha
Helix 125
125
D
3503 3510Right-handed alpha
Helix 126
126
D
3515 3517Right-handed 310
Helix 127
127
D
3518 3537Right-handed alpha
Helix 128
128
D
3548 3557Right-handed alpha
Helix 129
129
E
4026 4031Right-handed alpha
Helix 130
130
E
4036 4040Right-handed 310
Helix 131
131
E
4041 4048Right-handed alpha
Helix 132
132
E
4060 4075Right-handed alpha
Helix 133
133
E
4077 4090Right-handed alpha
Helix 134
134
E
4092 4103Right-handed alpha
Helix 135
135
E
4103 4112Right-handed alpha
Helix 136
136
E
4114 4123Right-handed alpha
Helix 137
137
E
4142 4149Right-handed alpha
Helix 138
138
E
4166 4170Right-handed 310
Helix 139
139
E
4172 4176Right-handed 310
Helix 140
140
E
4177 4192Right-handed alpha
Helix 141
141
E
4194 4196Right-handed 310
Helix 142
142
E
4209 4214Right-handed alpha
Helix 143
143
E
4228 4247Right-handed alpha
Helix 144
144
E
4259 4270Right-handed alpha
Helix 145
145
E
4278 4299Right-handed alpha
Helix 146
146
E
4301 4305Right-handed 310
Helix 147
147
E
4314 4330Right-handed alpha
Helix 148
148
E
4333 4338Right-handed alpha
Helix 149
149
E
4362 4366Right-handed 310
Helix 150
150
E
4376 4385Right-handed alpha
Helix 151
151
E
4400 4411Right-handed alpha
Helix 152
152
E
4429 4436Right-handed alpha
Helix 153
153
E
4466 4469Right-handed 310
Helix 154
154
E
4470 4481Right-handed alpha
Helix 155
155
E
4487 4500Right-handed alpha
Helix 156
156
E
4503 4508Right-handed alpha
Helix 157
157
E
4515 4517Right-handed 310
Helix 158
158
E
4518 4537Right-handed alpha
Helix 159
159
E
4548 4554Right-handed alpha
Helix 160
160
F
5025 5031Right-handed alpha
Helix 161
161
F
5036 5040Right-handed 310
Helix 162
162
F
5041 5048Right-handed alpha
Helix 163
163
F
5060 5073Right-handed alpha
Helix 164
164
F
5077 5090Right-handed alpha
Helix 165
165
F
5092 5103Right-handed alpha
Helix 166
166
F
5103 5112Right-handed alpha
Helix 167
167
F
5114 5122Right-handed alpha
Helix 168
168
F
5138 5140Right-handed 310
Helix 169
169
F
5142 5150Right-handed alpha
Helix 170
170
F
5166 5170Right-handed 310
Helix 171
171
F
5172 5176Right-handed 310
Helix 172
172
F
5177 5192Right-handed alpha
Helix 173
173
F
5194 5196Right-handed 310
Helix 174
174
F
5211 5215Right-handed 310
Helix 175
175
F
5228 5247Right-handed alpha
Helix 176
176
F
5258 5270Right-handed alpha
Helix 177
177
F
5280 5299Right-handed alpha
Helix 178
178
F
5301 5305Right-handed 310
Helix 179
179
F
5314 5330Right-handed alpha
Helix 180
180
F
5333 5339Right-handed alpha
Helix 181
181
F
5359 5366Right-handed 310
Helix 182
182
F
5376 5385Right-handed alpha
Helix 183
183
F
5400 5411Right-handed alpha
Helix 184
184
F
5429 5435Right-handed alpha
Helix 185
185
F
5436 5438Right-handed 310
Helix 186
186
F
5466 5469Right-handed 310
Helix 187
187
F
5470 5481Right-handed alpha
Helix 188
188
F
5487 5500Right-handed alpha
Helix 189
189
F
5503 5510Right-handed alpha
Helix 190
190
F
5515 5517Right-handed 310
Helix 191
191
F
5518 5537Right-handed alpha
Helix 192
192
F
5548 5556Right-handed alpha
Helix 193
193
G
6025 6031Right-handed alpha
Helix 194
194
G
6036 6040Right-handed 310
Helix 195
195
G
6041 6048Right-handed alpha
Helix 196
196
G
6060 6073Right-handed alpha
Helix 197
197
G
6077 6090Right-handed alpha
Helix 198
198
G
6092 6103Right-handed alpha
Helix 199
199
G
6103 6112Right-handed alpha
Helix 200
200
G
6114 6122Right-handed alpha
Helix 201
201
G
6138 6140Right-handed 310
Helix 202
202
G
6142 6148Right-handed alpha
Helix 203
203
G
6166 6170Right-handed 310
Helix 204
204
G
6172 6176Right-handed 310
Helix 205
205
G
6177 6190Right-handed alpha
Helix 206
206
G
6194 6196Right-handed 310
Helix 207
207
G
6211 6215Right-handed 310
Helix 208
208
G
6229 6247Right-handed alpha
Helix 209
209
G
6259 6270Right-handed alpha
Helix 210
210
G
6280 6299Right-handed alpha
Helix 211
211
G
6301 6305Right-handed 310
Helix 212
212
G
6314 6331Right-handed alpha
Helix 213
213
G
6333 6340Right-handed alpha
Helix 214
214
G
6362 6366Right-handed 310
Helix 215
215
G
6376 6385Right-handed alpha
Helix 216
216
G
6400 6411Right-handed alpha
Helix 217
217
G
6430 6435Right-handed alpha
Helix 218
218
G
6466 6469Right-handed 310
Helix 219
219
G
6470 6481Right-handed alpha
Helix 220
220
G
6487 6500Right-handed alpha
Helix 221
221
G
6503 6509Right-handed alpha
Helix 222
222
G
6515 6517Right-handed 310
Helix 223
223
G
6518 6537Right-handed alpha
Helix 224
224
G
6548 6556Right-handed alpha
Helix 225
225
H
7025 7031Right-handed alpha
Helix 226
226
H
7041 7047Right-handed alpha
Helix 227
227
H
7060 7073Right-handed alpha
Helix 228
228
H
7077 7090Right-handed alpha
Helix 229
229
H
7092 7103Right-handed alpha
Helix 230
230
H
7103 7112Right-handed alpha
Helix 231
231
H
7114 7122Right-handed alpha
Helix 232
232
H
7138 7140Right-handed 310
Helix 233
233
H
7142 7150Right-handed alpha
Helix 234
234
H
7166 7170Right-handed 310
Helix 235
235
H
7172 7178Right-handed 310
Helix 236
236
H
7179 7192Right-handed alpha
Helix 237
237
H
7194 7196Right-handed 310
Helix 238
238
H
7209 7214Right-handed alpha
Helix 239
239
H
7229 7247Right-handed alpha
Helix 240
240
H
7259 7271Right-handed alpha
Helix 241
241
H
7280 7299Right-handed alpha
Helix 242
242
H
7301 7305Right-handed 310
Helix 243
243
H
7314 7328Right-handed alpha
Helix 244
244
H
7333 7340Right-handed alpha
Helix 245
245
H
7362 7366Right-handed 310
Helix 246
246
H
7376 7385Right-handed alpha
Helix 247
247
H
7400 7411Right-handed alpha
Helix 248
248
H
7429 7435Right-handed alpha
Helix 249
249
H
7466 7469Right-handed 310
Helix 250
250
H
7470 7482Right-handed alpha
Helix 251
251
H
7487 7500Right-handed alpha
Helix 252
252
H
7503 7510Right-handed alpha
Helix 253
253
H
7515 7517Right-handed 310
Helix 254
254
H
7518 7537Right-handed alpha
Helix 255
255
H
7548 7554Right-handed alpha
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There are 25 sheets in PDB entry 1PJL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
198 204parallel
Strand 3
A
157 161parallel
Strand 4
A
251 254parallel
Strand 5
A
274 277parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
341 345anti-parallel
Strand 3
A
307 309parallel
Strand 4
A
388 391parallel
Strand 5
A
415 418parallel
Strand 6
A
442 445parallel
Strand 7
A
463 464parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1133 1134first strand
Strand 2
B
1198 1202parallel
Strand 3
B
1157 1161parallel
Strand 4
B
1251 1254parallel
Strand 5
B
1275 1277parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1344 1345first strand
Strand 2
B
1348 1349anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1388 1391first strand
Strand 2
B
1415 1418parallel
Strand 3
B
1442 1445parallel
Strand 4
B
1463 1464parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1452 1453first strand
Strand 2
B
1459 1460anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2133 2136first strand
Strand 2
C
2200 2204parallel
Strand 3
C
2157 2161parallel
Strand 4
C
2251 2254parallel
Strand 5
C
2274 2277parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2348 2349first strand
Strand 2
C
2341 2345anti-parallel
Strand 3
C
2307 2309parallel
Strand 4
C
2388 2391parallel
Strand 5
C
2415 2418parallel
Strand 6
C
2442 2445parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2453 2454first strand
Strand 2
C
2458 2459anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3198 3200first strand
Strand 2
D
3157 3160parallel
Strand 3
D
3251 3254parallel
Strand 4
D
3274 3277parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3307 3309first strand
Strand 2
D
3341 3345parallel
Strand 3
D
3348 3349anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3388 3391first strand
Strand 2
D
3415 3418parallel
Strand 3
D
3442 3445parallel
Strand 4
D
3463 3464parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3452 3453first strand
Strand 2
D
3459 3460anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4133 4136first strand
Strand 2
E
4198 4204parallel
Strand 3
E
4157 4161parallel
Strand 4
E
4251 4254parallel
Strand 5
E
4274 4277parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4341 4343first strand
Strand 2
E
4307 4309parallel
Strand 3
E
4388 4391parallel
Strand 4
E
4415 4418parallel
Strand 5
E
4442 4445parallel
Strand 6
E
4463 4464parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4452 4454first strand
Strand 2
E
4458 4460anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5133 5136first strand
Strand 2
F
5198 5204parallel
Strand 3
F
5157 5161parallel
Strand 4
F
5251 5254parallel
Strand 5
F
5275 5277parallel
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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5348 5349first strand
Strand 2
F
5341 5345anti-parallel
Strand 3
F
5307 5309parallel
Strand 4
F
5388 5391parallel
Strand 5
F
5415 5418parallel
Strand 6
F
5442 5445parallel
Strand 7
F
5463 5464parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5452 5453first strand
Strand 2
F
5459 5460anti-parallel
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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6133 6136first strand
Strand 2
G
6198 6204parallel
Strand 3
G
6157 6161parallel
Strand 4
G
6251 6254parallel
Strand 5
G
6274 6277parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6308 6309first strand
Strand 2
G
6388 6391parallel
Strand 3
G
6415 6418parallel
Strand 4
G
6442 6445parallel
Strand 5
G
6463 6464parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6452 6453first strand
Strand 2
G
6459 6460anti-parallel
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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
7133 7136first strand
Strand 2
H
7198 7204parallel
Strand 3
H
7157 7159parallel
Strand 4
H
7251 7254parallel
Strand 5
H
7274 7277parallel
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There are 7 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
7348 7349first strand
Strand 2
H
7342 7345anti-parallel
Strand 3
H
7308 7309parallel
Strand 4
H
7388 7391parallel
Strand 5
H
7415 7418parallel
Strand 6
H
7442 7445parallel
Strand 7
H
7463 7464parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
7452 7453first strand
Strand 2
H
7459 7460anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il