Analysis of interatomic Contacts of Structural Units in PDB entry:
1PJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PJR entry

There is 1 chain in PDB entry 1PJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 651
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1PJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 9Right-handed alpha
Helix 2
2
A
14 21Right-handed alpha
Helix 3
3
A
37 50Right-handed alpha
Helix 4
4
A
56 58Right-handed 310
Helix 5
5
A
66 84Right-handed alpha
Helix 6
6
A
92 107Right-handed alpha
Helix 7
7
A
118 130Right-handed alpha
Helix 8
8
A
141 154Right-handed alpha
Helix 9
9
A
158 163Right-handed alpha
Helix 10
10
A
169 186Right-handed alpha
Helix 11
11
A
194 205Right-handed alpha
Helix 12
12
A
207 216Right-handed alpha
Helix 13
13
A
225 227Right-handed 310
Helix 14
14
A
230 240Right-handed alpha
Helix 15
15
A
252 254Right-handed 310
Helix 16
16
A
258 260Right-handed 310
Helix 17
17
A
265 273Right-handed alpha
Helix 18
18
A
290 302Right-handed alpha
Helix 19
19
A
329 344Right-handed alpha
Helix 20
20
A
351 353Right-handed 310
Helix 21
21
A
361 373Right-handed 310
Helix 22
22
A
390 403Right-handed alpha
Helix 23
23
A
408 415Right-handed alpha
Helix 24
24
A
442 446Right-handed alpha
Helix 25
25
A
448 451Right-handed alpha
Helix 26
26
A
462 476Right-handed alpha
Helix 27
27
A
480 490Right-handed alpha
Helix 28
28
A
493 500Right-handed alpha
Helix 29
29
A
503 525Right-handed alpha
Helix 30
30
A
531 537Right-handed alpha
Helix 31
31
A
564 567Right-handed 310
Helix 32
32
A
588 591Right-handed 310
Helix 33
33
A
594 610Right-handed alpha
Helix 34
34
A
636 640Right-handed alpha
Helix 35
35
A
643 645Right-handed 310
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There are 3 sheets in PDB entry 1PJR. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 282first strand
Strand 2
A
27 31parallel
Strand 3
A
246 250parallel
Strand 4
A
219 222parallel
Strand 5
A
59 63parallel
Strand 6
A
88 91parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 648first strand
Strand 2
A
321 326parallel
Strand 3
A
614 620parallel
Strand 4
A
574 577parallel
Strand 5
A
354 358parallel
Strand 6
A
559 563parallel
Strand 7
A
378 381parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 625first strand
Strand 2
A
628 630anti-parallel
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