Analysis of interatomic Contacts of Structural Units in PDB entry:
1PL0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PL0 entry

There are 4 chains in PDB entry 1PL0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 4HIS 592
B
GLY 4HIS 592
C
GLN 5HIS 592
D
GLY 4HIS 592
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are106 helices in PDB entry 1PL0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
16 27Right-handed alpha
Helix 2
2
A
34 43Right-handed alpha
Helix 3
3
A
51 56Right-handed alpha
Helix 4
4
A
69 78Right-handed alpha
Helix 5
5
A
81 90Right-handed alpha
Helix 6
6
A
105 110Right-handed alpha
Helix 7
7
A
116 123Right-handed alpha
Helix 8
8
A
126 138Right-handed alpha
Helix 9
9
A
147 149Right-handed 310
Helix 10
10
A
150 160Right-handed alpha
Helix 11
11
A
167 198Right-handed alpha
Helix 12
12
A
236 258Right-handed alpha
Helix 13
13
A
280 287Right-handed alpha
Helix 14
14
A
289 296Right-handed 310
Helix 15
15
A
297 307Right-handed alpha
Helix 16
16
A
326 335Right-handed alpha
Helix 17
17
A
347 356Right-handed alpha
Helix 18
18
A
357 361Right-handed 310
Helix 19
19
A
396 401Right-handed 310
Helix 20
20
A
413 427Right-handed alpha
Helix 21
21
A
450 468Right-handed alpha
Helix 22
22
A
470 475Right-handed alpha
Helix 23
23
A
483 496Right-handed alpha
Helix 24
24
A
502 510Right-handed alpha
Helix 25
25
A
520 529Right-handed alpha
Helix 26
26
A
545 553Right-handed alpha
Helix 27
27
A
567 579Right-handed alpha
Helix 28
28
B
16 26Right-handed alpha
Helix 29
29
B
34 44Right-handed alpha
Helix 30
30
B
51 56Right-handed alpha
Helix 31
31
B
60 64Right-handed 310
Helix 32
32
B
69 78Right-handed alpha
Helix 33
33
B
81 92Right-handed alpha
Helix 34
34
B
105 112Right-handed alpha
Helix 35
35
B
116 122Right-handed alpha
Helix 36
36
B
126 138Right-handed alpha
Helix 37
37
B
147 149Right-handed 310
Helix 38
38
B
150 160Right-handed alpha
Helix 39
39
B
167 198Right-handed alpha
Helix 40
40
B
236 258Right-handed alpha
Helix 41
41
B
280 287Right-handed alpha
Helix 42
42
B
289 296Right-handed 310
Helix 43
43
B
297 308Right-handed alpha
Helix 44
44
B
326 335Right-handed alpha
Helix 45
45
B
347 355Right-handed alpha
Helix 46
46
B
356 361Right-handed 310
Helix 47
47
B
411 427Right-handed alpha
Helix 48
48
B
450 468Right-handed alpha
Helix 49
49
B
486 496Right-handed alpha
Helix 50
50
B
503 512Right-handed alpha
Helix 51
51
B
520 529Right-handed alpha
Helix 52
52
B
545 553Right-handed alpha
Helix 53
53
B
567 579Right-handed alpha
Helix 54
54
C
16 27Right-handed alpha
Helix 55
55
C
34 43Right-handed alpha
Helix 56
56
C
51 56Right-handed alpha
Helix 57
57
C
69 78Right-handed alpha
Helix 58
58
C
81 92Right-handed alpha
Helix 59
59
C
105 112Right-handed alpha
Helix 60
60
C
116 123Right-handed alpha
Helix 61
61
C
126 138Right-handed alpha
Helix 62
62
C
149 160Right-handed alpha
Helix 63
63
C
167 198Right-handed alpha
Helix 64
64
C
236 258Right-handed alpha
Helix 65
65
C
282 287Right-handed alpha
Helix 66
66
C
289 293Right-handed 310
Helix 67
67
C
297 307Right-handed alpha
Helix 68
68
C
311 315Right-handed 310
Helix 69
69
C
326 335Right-handed alpha
Helix 70
70
C
347 355Right-handed alpha
Helix 71
71
C
356 361Right-handed alpha
Helix 72
72
C
396 401Right-handed 310
Helix 73
73
C
411 427Right-handed alpha
Helix 74
74
C
450 468Right-handed alpha
Helix 75
75
C
470 475Right-handed alpha
Helix 76
76
C
485 496Right-handed alpha
Helix 77
77
C
501 510Right-handed alpha
Helix 78
78
C
520 529Right-handed alpha
Helix 79
79
C
545 553Right-handed alpha
Helix 80
80
C
567 578Right-handed alpha
Helix 81
81
D
16 27Right-handed alpha
Helix 82
82
D
34 43Right-handed alpha
Helix 83
83
D
51 56Right-handed alpha
Helix 84
84
D
60 64Right-handed 310
Helix 85
85
D
69 78Right-handed alpha
Helix 86
86
D
81 92Right-handed alpha
Helix 87
87
D
105 112Right-handed alpha
Helix 88
88
D
116 123Right-handed alpha
Helix 89
89
D
126 138Right-handed alpha
Helix 90
90
D
149 160Right-handed alpha
Helix 91
91
D
167 198Right-handed alpha
Helix 92
92
D
236 258Right-handed alpha
Helix 93
93
D
280 287Right-handed alpha
Helix 94
94
D
289 296Right-handed 310
Helix 95
95
D
297 307Right-handed alpha
Helix 96
96
D
326 335Right-handed alpha
Helix 97
97
D
347 355Right-handed alpha
Helix 98
98
D
356 361Right-handed 310
Helix 99
99
D
397 401Right-handed 310
Helix 100
100
D
411 427Right-handed alpha
Helix 101
101
D
450 468Right-handed alpha
Helix 102
102
D
489 497Right-handed alpha
Helix 103
103
D
503 510Right-handed alpha
Helix 104
104
D
520 529Right-handed alpha
Helix 105
105
D
545 553Right-handed alpha
Helix 106
106
D
567 578Right-handed alpha
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There are 17 sheets in PDB entry 1PL0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
49 50first strand
Strand 2
A
30 33parallel
Strand 3
A
6 10parallel
Strand 4
A
96 101parallel
Strand 5
A
143 145parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
203 206first strand
Strand 2
A
217 220anti-parallel
Strand 3
B
384 389anti-parallel
Strand 4
B
376 381anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
228 232first strand
Strand 2
A
363 367anti-parallel
Strand 3
A
338 343parallel
Strand 4
A
317 321parallel
Strand 5
A
261 266anti-parallel
Strand 6
A
269 275anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
376 381first strand
Strand 2
A
384 389anti-parallel
Strand 3
B
217 220anti-parallel
Strand 4
B
203 205anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
440 445first strand
Strand 2
A
433 437anti-parallel
Strand 3
A
534 538anti-parallel
Strand 4
A
556 562parallel
Strand 5
A
581 585parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 49first strand
Strand 2
B
30 32parallel
Strand 3
B
6 10parallel
Strand 4
B
96 101parallel
Strand 5
B
143 145parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
228 232first strand
Strand 2
B
363 367anti-parallel
Strand 3
B
338 343parallel
Strand 4
B
317 321parallel
Strand 5
B
261 265anti-parallel
Strand 6
B
270 275anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
440 446first strand
Strand 2
B
432 437anti-parallel
Strand 3
B
534 538anti-parallel
Strand 4
B
556 562parallel
Strand 5
B
581 585parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
49 50first strand
Strand 2
C
30 33parallel
Strand 3
C
6 10parallel
Strand 4
C
96 101parallel
Strand 5
C
143 145parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
203 206first strand
Strand 2
C
217 220anti-parallel
Strand 3
D
384 387anti-parallel
Strand 4
D
379 381anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
228 232first strand
Strand 2
C
363 367anti-parallel
Strand 3
C
338 343parallel
Strand 4
C
317 321parallel
Strand 5
C
261 265anti-parallel
Strand 6
C
270 275anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
376 381first strand
Strand 2
C
384 389anti-parallel
Strand 3
D
217 220anti-parallel
Strand 4
D
203 205anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
441 445first strand
Strand 2
C
433 436anti-parallel
Strand 3
C
534 538anti-parallel
Strand 4
C
556 562parallel
Strand 5
C
581 585parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
477 478first strand
Strand 2
C
512 514anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
48 50first strand
Strand 2
D
29 33parallel
Strand 3
D
5 11parallel
Strand 4
D
96 102parallel
Strand 5
D
143 145parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
228 232first strand
Strand 2
D
363 367anti-parallel
Strand 3
D
338 343parallel
Strand 4
D
317 321parallel
Strand 5
D
261 265anti-parallel
Strand 6
D
270 275anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
440 445first strand
Strand 2
D
433 437anti-parallel
Strand 3
D
534 538anti-parallel
Strand 4
D
556 562parallel
Strand 5
D
581 585parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il