Analysis of interatomic Contacts of Structural Units in PDB entry:
1PM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PM7 entry

There are 2 chains in PDB entry 1PM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 199
B
 MET 1MET 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1PM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 40Right-handed alpha
Helix 2
2
A
168 173Right-handed alpha
Helix 3
3
A
176 183Right-handed alpha
Helix 4
4
A
188 198Right-handed alpha
Helix 5
5
B
32 40Right-handed alpha
Helix 6
6
B
139 141Right-handed 310
Helix 7
7
B
168 173Right-handed alpha
Helix 8
8
B
176 183Right-handed alpha
Helix 9
9
B
188 198Right-handed alpha
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There are 4 sheets in PDB entry 1PM7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
11 15anti-parallel
Strand 3
A
110 113anti-parallel
Strand 4
A
72 78anti-parallel
Strand 5
A
128 134anti-parallel
Strand 6
A
47 53anti-parallel
Strand 7
B
24 31anti-parallel
Strand 8
B
19 21anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
24 31anti-parallel
Strand 3
B
47 53anti-parallel
Strand 4
B
128 134anti-parallel
Strand 5
B
72 78anti-parallel
Strand 6
B
110 113anti-parallel
Strand 7
B
11 15anti-parallel
Strand 8
B
2 5anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 104first strand
Strand 2
A
80 86anti-parallel
Strand 3
A
118 123anti-parallel
Strand 4
A
58 64anti-parallel
Strand 5
A
143 145anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 104first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
118 123anti-parallel
Strand 4
B
58 64anti-parallel
Strand 5
B
143 145anti-parallel
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