Analysis of interatomic Contacts of Structural Units in PDB entry:
1PME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PME entry

There are 2 chains in PDB entry 1PME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 16THR 160
A
 ASP 162SER 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1PME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 77Right-handed alpha
Helix 2
2
A
112 118Right-handed alpha
Helix 3
3
A
123 142Right-handed alpha
Helix 4
4
A
152 154Right-handed 310
Helix 5
5
A
176 178Right-handed 310
Helix 6
6
A
191 193Right-handed 310
Helix 7
7
A
196 198Right-handed 310
Helix 8
8
A
207 223Right-handed 310
Helix 9
9
A
233 244Right-handed alpha
Helix 10
10
A
249 253Right-handed alpha
Helix 11
11
A
258 265Right-handed alpha
Helix 12
12
A
275 278Right-handed alpha
Helix 13
13
A
284 293Right-handed alpha
Helix 14
14
A
304 308Right-handed alpha
Helix 15
15
A
311 313Right-handed 310
Helix 16
16
A
319 321Right-handed 310
Helix 17
17
A
340 350Right-handed alpha
Helix 18
18
A
352 354Right-handed 310
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There are 2 sheets in PDB entry 1PME. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
101 106anti-parallel
Strand 4
A
88 90anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
163 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il