Analysis of interatomic Contacts of Structural Units in PDB entry:
1PNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PNV entry

There are 3 chains in PDB entry 1PNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 390
B
 MET 1LYS 391
C
 ASN 3ASN 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 1PNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 28Right-handed alpha
Helix 2
2
A
36 38Right-handed 310
Helix 3
3
A
39 47Right-handed alpha
Helix 4
4
A
58 62Right-handed 310
Helix 5
5
A
74 91Right-handed alpha
Helix 6
6
A
101 116Right-handed alpha
Helix 7
7
A
125 129Right-handed 310
Helix 8
8
A
129 133Right-handed 310
Helix 9
9
A
136 149Right-handed alpha
Helix 10
10
A
149 160Right-handed alpha
Helix 11
11
A
167 174Right-handed alpha
Helix 12
12
A
210 219Right-handed alpha
Helix 13
13
A
234 250Right-handed alpha
Helix 14
14
A
279 284Right-handed alpha
Helix 15
15
A
285 287Right-handed 310
Helix 16
16
A
295 304Right-handed alpha
Helix 17
17
A
324 332Right-handed alpha
Helix 18
18
A
344 356Right-handed alpha
Helix 19
19
A
357 368Right-handed alpha
Helix 20
20
A
374 390Right-handed alpha
Helix 21
21
B
10 27Right-handed alpha
Helix 22
22
B
36 38Right-handed 310
Helix 23
23
B
39 45Right-handed alpha
Helix 24
24
B
71 73Right-handed 310
Helix 25
25
B
74 90Right-handed alpha
Helix 26
26
B
101 115Right-handed alpha
Helix 27
27
B
125 129Right-handed 310
Helix 28
28
B
129 133Right-handed 310
Helix 29
29
B
134 159Right-handed alpha
Helix 30
30
B
167 174Right-handed alpha
Helix 31
31
B
210 219Right-handed alpha
Helix 32
32
B
233 250Right-handed alpha
Helix 33
33
B
279 285Right-handed alpha
Helix 34
34
B
295 306Right-handed alpha
Helix 35
35
B
323 332Right-handed alpha
Helix 36
36
B
344 356Right-handed alpha
Helix 37
37
B
357 369Right-handed alpha
Helix 38
38
B
374 391Right-handed alpha
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There are 4 sheets in PDB entry 1PNV. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
30 35parallel
Strand 3
A
2 8parallel
Strand 4
A
95 100parallel
Strand 5
A
119 123parallel
Strand 6
A
178 179parallel
Strand 7
A
196 197parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
254 257parallel
Strand 3
A
224 227parallel
Strand 4
A
289 292parallel
Strand 5
A
309 312parallel
Strand 6
A
335 338parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
30 35parallel
Strand 3
B
2 8parallel
Strand 4
B
95 100parallel
Strand 5
B
119 123parallel
Strand 6
B
178 179parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 275first strand
Strand 2
B
254 257parallel
Strand 3
B
224 227parallel
Strand 4
B
290 293parallel
Strand 5
B
309 312parallel
Strand 6
B
335 336parallel
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