Analysis of interatomic Contacts of Structural Units in PDB entry:
1PO1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PO1 entry

There are 5 chains in PDB entry 1PO1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
 GLY 6THR 10
1
 ALA 20TYR 302
2
 GLU 5GLN 272
3
 GLY 1ALA 235
4
 GLY 2ASN 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1PO1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
47 49Right-handed 310
Helix 2
2
1
57 60Right-handed alpha
Helix 3
3
1
73 75Right-handed 310
Helix 4
4
1
77 81Right-handed alpha
Helix 5
5
1
117 124Right-handed alpha
Helix 6
6
1
173 176Right-handed 310
Helix 7
7
2
34 36Right-handed 310
Helix 8
8
2
57 59Right-handed 310
Helix 9
9
2
84 86Right-handed 310
Helix 10
10
2
90 98Right-handed alpha
Helix 11
11
2
145 148Right-handed alpha
Helix 12
12
2
151 153Right-handed 310
Helix 13
13
2
178 180Right-handed 310
Helix 14
14
2
187 192Right-handed 310
Helix 15
15
3
43 47Right-handed alpha
Helix 16
16
3
65 68Right-handed 310
Helix 17
17
3
99 106Right-handed alpha
Helix 18
18
3
145 150Right-handed alpha
Helix 19
19
3
183 185Right-handed 310
Helix 20
20
4
36 38Right-handed 310
Helix 21
21
4
50 54Right-handed 310
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There are 12 sheets in PDB entry 1PO1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
0
8 10first strand
Strand 2
4
4 7parallel
Strand 3
4
26 29anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
106 109first strand
Strand 2
1
239 244anti-parallel
Strand 3
1
154 160anti-parallel
Strand 4
1
182 186anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
127 129first strand
Strand 2
1
267 269anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
192 196first strand
Strand 2
1
131 142anti-parallel
Strand 3
1
253 264anti-parallel
Strand 4
1
85 94anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
14 18first strand
Strand 2
2
21 25anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
63 65first strand
Strand 2
2
250 256anti-parallel
Strand 3
2
105 111anti-parallel
Strand 4
2
205 210anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
69 72first strand
Strand 2
2
246 249anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
78 82first strand
Strand 2
2
227 235anti-parallel
Strand 3
2
121 128anti-parallel
Strand 4
2
195 199anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
101 103first strand
Strand 2
2
259 261anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
70 73first strand
Strand 2
3
207 216anti-parallel
Strand 3
3
114 120anti-parallel
Strand 4
3
163 168anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
83 86first strand
Strand 2
3
189 194anti-parallel
Strand 3
3
129 135anti-parallel
Strand 4
3
152 157anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
109 111first strand
Strand 2
3
221 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il