Analysis of interatomic Contacts of Structural Units in PDB entry:
1POT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1POT entry

There is 1 chain in PDB entry 1POT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 26GLY 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1POT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
42 50Right-handed alpha
Helix 2
B
A
61 70Right-handed alpha
Helix 3
C
A
86 92Right-handed alpha
Helix 4
D
A
100 103Right-handed 310
Helix 5
E
A
105 109Right-handed 310
Helix 6
F
A
151 155Right-handed 310
Helix 7
G
A
169 179Right-handed alpha
Helix 8
H
A
190 200Right-handed alpha
Helix 9
I
A
215 219Right-handed alpha
Helix 10
J
A
229 239Right-handed alpha
Helix 11
K
A
268 279Right-handed alpha
Helix 12
L
A
281 290Right-handed alpha
Helix 13
M
A
298 302Right-handed alpha
Helix 14
N
A
306 311Right-handed alpha
Helix 15
O
A
316 323Right-handed alpha
Helix 16
P
A
333 347Right-handed alpha
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There are 2 sheets in PDB entry 1POT. Click on sheet of interest to get list of strands forming it: S1, S2,

There are 5 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 34first strand
Strand 2
A
53 59parallel
Strand 3
A
79 82parallel
Strand 4
A
127 134parallel
Strand 5
A
253 260anti-parallel
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There are 5 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
162 165anti-parallel
Strand 3
A
207 209parallel
Strand 4
A
224 228parallel
Strand 5
A
242 246parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il