Analysis of interatomic Contacts of Structural Units in PDB entry:
1POY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1POY entry

There are 4 chains in PDB entry 1POY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 ASN 26ARG 348
2
 ASN 26ARG 348
3
 ASN 26ARG 348
4
 ASN 26ARG 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 1POY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
43 50Right-handed alpha
Helix 2
2
1
62 70Right-handed alpha
Helix 3
3
1
84 91Right-handed 310
Helix 4
4
1
101 103Right-handed 310
Helix 5
5
1
105 109Right-handed 310
Helix 6
6
1
118 120Right-handed 310
Helix 7
7
1
145 147Right-handed 310
Helix 8
8
1
151 155Right-handed 310
Helix 9
9
1
157 159Right-handed 310
Helix 10
10
1
169 179Right-handed alpha
Helix 11
11
1
189 203Right-handed alpha
Helix 12
12
1
215 219Right-handed alpha
Helix 13
13
1
230 239Right-handed alpha
Helix 14
14
1
268 279Right-handed alpha
Helix 15
15
1
281 290Right-handed alpha
Helix 16
16
1
298 303Right-handed alpha
Helix 17
17
1
306 310Right-handed alpha
Helix 18
18
1
318 322Right-handed alpha
Helix 19
19
1
331 347Right-handed 310
Helix 20
20
2
42 50Right-handed alpha
Helix 21
21
2
62 71Right-handed alpha
Helix 22
22
2
84 92Right-handed 310
Helix 23
23
2
101 103Right-handed 310
Helix 24
24
2
107 109Right-handed 310
Helix 25
25
2
112 114Right-handed 310
Helix 26
26
2
118 120Right-handed 310
Helix 27
27
2
145 147Right-handed 310
Helix 28
28
2
151 155Right-handed 310
Helix 29
29
2
157 159Right-handed 310
Helix 30
30
2
169 180Right-handed alpha
Helix 31
31
2
189 203Right-handed alpha
Helix 32
32
2
214 219Right-handed 310
Helix 33
33
2
230 237Right-handed alpha
Helix 34
34
2
268 279Right-handed alpha
Helix 35
35
2
281 291Right-handed alpha
Helix 36
36
2
298 302Right-handed alpha
Helix 37
37
2
306 310Right-handed alpha
Helix 38
38
2
318 321Right-handed alpha
Helix 39
39
2
331 347Right-handed 310
Helix 40
40
3
35 37Right-handed 310
Helix 41
41
3
42 50Right-handed alpha
Helix 42
42
3
62 70Right-handed alpha
Helix 43
43
3
84 92Right-handed alpha
Helix 44
44
3
107 109Right-handed 310
Helix 45
45
3
112 114Right-handed 310
Helix 46
46
3
118 120Right-handed 310
Helix 47
47
3
145 147Right-handed 310
Helix 48
48
3
152 155Right-handed 310
Helix 49
49
3
157 159Right-handed 310
Helix 50
50
3
169 180Right-handed alpha
Helix 51
51
3
189 204Right-handed alpha
Helix 52
52
3
216 219Right-handed alpha
Helix 53
53
3
230 237Right-handed alpha
Helix 54
54
3
268 278Right-handed alpha
Helix 55
55
3
281 291Right-handed alpha
Helix 56
56
3
298 302Right-handed alpha
Helix 57
57
3
306 309Right-handed alpha
Helix 58
58
3
318 323Right-handed alpha
Helix 59
59
3
331 347Right-handed 310
Helix 60
60
4
35 37Right-handed 310
Helix 61
61
4
42 50Right-handed alpha
Helix 62
62
4
62 71Right-handed alpha
Helix 63
63
4
84 91Right-handed 310
Helix 64
64
4
101 103Right-handed 310
Helix 65
65
4
107 109Right-handed 310
Helix 66
66
4
112 114Right-handed 310
Helix 67
67
4
118 120Right-handed 310
Helix 68
68
4
151 155Right-handed 310
Helix 69
69
4
157 159Right-handed 310
Helix 70
70
4
169 180Right-handed alpha
Helix 71
71
4
189 203Right-handed alpha
Helix 72
72
4
215 219Right-handed alpha
Helix 73
73
4
230 239Right-handed alpha
Helix 74
74
4
268 279Right-handed alpha
Helix 75
75
4
281 291Right-handed alpha
Helix 76
76
4
298 303Right-handed alpha
Helix 77
77
4
318 322Right-handed alpha
Helix 78
78
4
331 346Right-handed 310
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There are 16 sheets in PDB entry 1POY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
28 34first strand
Strand 2
1
53 59parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
80 83first strand
Strand 2
1
254 260anti-parallel
Strand 3
1
127 133anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
225 229first strand
Strand 2
1
134 139anti-parallel
Strand 3
1
243 246anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
28 34first strand
Strand 2
2
53 59parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
225 229first strand
Strand 2
2
134 139anti-parallel
Strand 3
2
243 246anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
28 34first strand
Strand 2
3
53 59parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
80 83first strand
Strand 2
3
253 260anti-parallel
Strand 3
3
127 138anti-parallel
Strand 4
3
225 229anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
136 139first strand
Strand 2
3
243 246anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
28 34first strand
Strand 2
4
53 59parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
80 83first strand
Strand 2
4
253 260anti-parallel
Strand 3
4
127 138anti-parallel
Strand 4
4
225 229anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
136 139first strand
Strand 2
4
243 246anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
163 165first strand
Strand 2
1
206 209parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
127 134first strand
Strand 2
2
253 259anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
163 165first strand
Strand 2
2
206 209parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
163 165first strand
Strand 2
3
206 209parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
163 166first strand
Strand 2
4
206 210parallel
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