Analysis of interatomic Contacts of Structural Units in PDB entry:
1PP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PP6 entry

There are 5 chains in PDB entry 1PP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5PRO 198
B
 ASN 1005PRO 1198
C
 ASN 2005PRO 2198
D
 ASN 3005PRO 3198
E
 ASN 4005PRO 4198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 1PP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
44 51Right-handed alpha
Helix 3
3
A
75 90Right-handed alpha
Helix 4
4
A
99 109Right-handed alpha
Helix 5
5
A
109 114Right-handed alpha
Helix 6
6
A
165 170Right-handed 310
Helix 7
7
B
1014 1016Right-handed 310
Helix 8
8
B
1017 1030Right-handed alpha
Helix 9
9
B
1042 1051Right-handed alpha
Helix 10
10
B
1075 1090Right-handed alpha
Helix 11
11
B
1095 1108Right-handed alpha
Helix 12
12
B
1109 1114Right-handed alpha
Helix 13
13
C
2014 2016Right-handed 310
Helix 14
14
C
2017 2027Right-handed alpha
Helix 15
15
C
2042 2051Right-handed alpha
Helix 16
16
C
2075 2091Right-handed alpha
Helix 17
17
C
2092 2094Right-handed 310
Helix 18
18
C
2098 2106Right-handed alpha
Helix 19
19
C
2107 2110Right-handed 310
Helix 20
20
D
3014 3016Right-handed 310
Helix 21
21
D
3017 3030Right-handed alpha
Helix 22
22
D
3042 3050Right-handed alpha
Helix 23
23
D
3074 3090Right-handed alpha
Helix 24
24
D
3097 3103Right-handed alpha
Helix 25
25
D
3166 3170Right-handed 310
Helix 26
26
E
4014 4016Right-handed 310
Helix 27
27
E
4017 4030Right-handed alpha
Helix 28
28
E
4044 4049Right-handed alpha
Helix 29
29
E
4078 4090Right-handed alpha
Helix 30
30
E
4096 4108Right-handed alpha
Helix 31
31
E
4109 4116Right-handed alpha
Helix 32
32
E
4166 4170Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 1PP6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
129 139parallel
Strand 3
A
119 124anti-parallel
Strand 4
A
129 139anti-parallel
Strand 5
A
149 161anti-parallel
Strand 6
A
177 192anti-parallel
Strand 7
A
58 62anti-parallel
Strand 8
A
177 192anti-parallel
Strand 9
A
65 68anti-parallel
Strand 10
A
177 192anti-parallel
Strand 11
A
72 74anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1008 1011first strand
Strand 2
B
1130 1141parallel
Strand 3
B
1119 1123anti-parallel
Strand 4
B
1130 1141anti-parallel
Strand 5
B
1149 1161anti-parallel
Strand 6
B
1177 1192anti-parallel
Strand 7
B
1058 1074anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2008 2011first strand
Strand 2
C
2129 2141parallel
Strand 3
C
2119 2120anti-parallel
Strand 4
C
2129 2141anti-parallel
Strand 5
C
2123 2124anti-parallel
Strand 6
C
2129 2141anti-parallel
Strand 7
C
2149 2161anti-parallel
Strand 8
C
2183 2192anti-parallel
Strand 9
C
2060 2067anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2032 2034first strand
Strand 2
C
2039 2041anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2071 2074first strand
Strand 2
C
2177 2180anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3009 3010first strand
Strand 2
D
3130 3138parallel
Strand 3
D
3119 3122anti-parallel
Strand 4
D
3130 3138anti-parallel
Strand 5
D
3149 3161anti-parallel
Strand 6
D
3178 3192anti-parallel
Strand 7
D
3058 3067anti-parallel
Strand 8
D
3178 3192anti-parallel
Strand 9
D
3071 3073anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3032 3033first strand
Strand 2
D
3040 3041anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4008 4011first strand
Strand 2
E
4130 4141parallel
Strand 3
E
4119 4123anti-parallel
Strand 4
E
4130 4141anti-parallel
Strand 5
E
4149 4161anti-parallel
Strand 6
E
4181 4192anti-parallel
Strand 7
E
4058 4068anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il