Analysis of interatomic Contacts of Structural Units in PDB entry:
1PPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PPR entry

There are 3 chains in PDB entry 1PPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
M
 ASP 1GLN 312
N
 ASP 1GLN 312
O
 ASP 1GLN 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1PPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
M
2 20Right-handed alpha
Helix 2
2
M
26 29Right-handed 310
Helix 3
3
M
37 53Right-handed alpha
Helix 4
4
M
56 72Right-handed alpha
Helix 5
5
M
82 98Right-handed alpha
Helix 6
6
M
101 114Right-handed alpha
Helix 7
7
M
119 126Right-handed alpha
Helix 8
8
M
129 149Right-handed alpha
Helix 9
9
M
165 183Right-handed alpha
Helix 10
10
M
190 192Right-handed 310
Helix 11
11
M
200 216Right-handed alpha
Helix 12
12
M
219 235Right-handed alpha
Helix 13
13
M
244 260Right-handed alpha
Helix 14
14
M
263 276Right-handed alpha
Helix 15
15
M
279 288Right-handed alpha
Helix 16
16
M
291 311Right-handed alpha
Helix 17
17
N
2 20Right-handed alpha
Helix 18
18
N
26 29Right-handed 310
Helix 19
19
N
37 53Right-handed alpha
Helix 20
20
N
56 72Right-handed alpha
Helix 21
21
N
82 98Right-handed alpha
Helix 22
22
N
101 114Right-handed alpha
Helix 23
23
N
119 126Right-handed alpha
Helix 24
24
N
129 149Right-handed alpha
Helix 25
25
N
165 183Right-handed alpha
Helix 26
26
N
190 192Right-handed 310
Helix 27
27
N
200 216Right-handed alpha
Helix 28
28
N
219 235Right-handed alpha
Helix 29
29
N
244 260Right-handed alpha
Helix 30
30
N
263 276Right-handed alpha
Helix 31
31
N
279 288Right-handed alpha
Helix 32
32
N
291 311Right-handed alpha
Helix 33
33
O
2 20Right-handed alpha
Helix 34
34
O
26 29Right-handed 310
Helix 35
35
O
37 53Right-handed alpha
Helix 36
36
O
56 72Right-handed alpha
Helix 37
37
O
82 98Right-handed alpha
Helix 38
38
O
101 114Right-handed alpha
Helix 39
39
O
119 126Right-handed alpha
Helix 40
40
O
129 149Right-handed alpha
Helix 41
41
O
165 183Right-handed alpha
Helix 42
42
O
190 192Right-handed 310
Helix 43
43
O
200 216Right-handed alpha
Helix 44
44
O
219 235Right-handed alpha
Helix 45
45
O
244 260Right-handed alpha
Helix 46
46
O
263 276Right-handed alpha
Helix 47
47
O
279 288Right-handed alpha
Helix 48
48
O
291 310Right-handed alpha
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There are no sheets in PDB entry 1PPR
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il