Analysis of interatomic Contacts of Structural Units in PDB entry:
1PR5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PR5 entry

There are 3 chains in PDB entry 1PR5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 237
B
 ALA 1LYS 237
C
 ALA 1LYS 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 1PR5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 32Right-handed alpha
Helix 2
2
A
65 80Right-handed alpha
Helix 3
3
A
114 120Right-handed alpha
Helix 4
4
A
130 144Right-handed alpha
Helix 5
5
A
165 173Right-handed alpha
Helix 6
6
A
181 193Right-handed alpha
Helix 7
7
A
219 236Right-handed alpha
Helix 8
8
B
21 33Right-handed alpha
Helix 9
9
B
65 81Right-handed alpha
Helix 10
10
B
114 120Right-handed alpha
Helix 11
11
B
130 144Right-handed alpha
Helix 12
12
B
165 173Right-handed alpha
Helix 13
13
B
181 192Right-handed alpha
Helix 14
14
B
213 237Right-handed alpha
Helix 15
15
C
21 33Right-handed alpha
Helix 16
16
C
65 80Right-handed alpha
Helix 17
17
C
114 119Right-handed alpha
Helix 18
18
C
130 145Right-handed alpha
Helix 19
19
C
165 173Right-handed alpha
Helix 20
20
C
181 192Right-handed alpha
Helix 21
21
C
212 218Right-handed alpha
Helix 22
22
C
222 237Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1PR5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 40first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
15 18parallel
Strand 5
A
84 92parallel
Strand 6
A
195 204parallel
Strand 7
A
103 111anti-parallel
Strand 8
A
149 155parallel
Strand 9
A
177 179parallel
Strand 10
A
84 92anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 40first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
55 60anti-parallel
Strand 4
B
15 18parallel
Strand 5
B
84 93parallel
Strand 6
B
195 205parallel
Strand 7
B
103 111anti-parallel
Strand 8
B
149 155parallel
Strand 9
B
177 179parallel
Strand 10
B
84 93anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 40first strand
Strand 2
C
47 52anti-parallel
Strand 3
C
55 60anti-parallel
Strand 4
C
15 18parallel
Strand 5
C
84 93parallel
Strand 6
C
195 205parallel
Strand 7
C
103 111anti-parallel
Strand 8
C
149 155parallel
Strand 9
C
177 179parallel
Strand 10
C
84 93anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il