Analysis of interatomic Contacts of Structural Units in PDB entry:
1PT6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PT6 entry

There are 2 chains in PDB entry 1PT6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 142ALA 333
B
 LEU 143THR 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1PT6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
157 170Right-handed alpha
Helix 2
2
A
201 211Right-handed alpha
Helix 3
3
A
221 232Right-handed alpha
Helix 4
4
A
235 239Right-handed 310
Helix 5
5
A
259 272Right-handed alpha
Helix 6
6
A
282 288Right-handed alpha
Helix 7
7
A
292 303Right-handed alpha
Helix 8
8
A
306 310Right-handed alpha
Helix 9
9
A
316 322Right-handed 310
Helix 10
10
A
323 332Right-handed alpha
Helix 11
11
B
157 170Right-handed alpha
Helix 12
12
B
201 211Right-handed alpha
Helix 13
13
B
221 232Right-handed alpha
Helix 14
14
B
235 239Right-handed 310
Helix 15
15
B
258 260Right-handed 310
Helix 16
16
B
261 272Right-handed alpha
Helix 17
17
B
282 289Right-handed alpha
Helix 18
18
B
292 303Right-handed alpha
Helix 19
19
B
306 310Right-handed alpha
Helix 20
20
B
316 322Right-handed 310
Helix 21
21
B
323 334Right-handed alpha
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There are 2 sheets in PDB entry 1PT6. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
180 186anti-parallel
Strand 3
A
143 150parallel
Strand 4
A
245 252parallel
Strand 5
A
274 281parallel
Strand 6
A
311 314parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 194first strand
Strand 2
B
180 186anti-parallel
Strand 3
B
144 150parallel
Strand 4
B
246 252parallel
Strand 5
B
274 281parallel
Strand 6
B
311 314parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il