Analysis of interatomic Contacts of Structural Units in PDB entry:
1PTJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PTJ entry

There are 3 chains in PDB entry 1PTJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 371
B
 MET 1GLY 381
C
 SER 30ASN 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 1PTJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 29Right-handed alpha
Helix 2
2
A
46 53Right-handed alpha
Helix 3
3
A
60 66Right-handed alpha
Helix 4
4
A
79 83Right-handed 310
Helix 5
5
A
101 104Right-handed 310
Helix 6
6
A
105 115Right-handed alpha
Helix 7
7
A
123 125Right-handed 310
Helix 8
8
A
131 134Right-handed 310
Helix 9
9
A
135 156Right-handed alpha
Helix 10
10
A
181 194Right-handed alpha
Helix 11
11
A
206 215Right-handed alpha
Helix 12
12
A
240 248Right-handed alpha
Helix 13
13
A
249 256Right-handed alpha
Helix 14
14
A
277 282Right-handed alpha
Helix 15
15
A
294 298Right-handed 310
Helix 16
16
A
322 326Right-handed 310
Helix 17
17
A
327 344Right-handed alpha
Helix 18
18
A
345 347Right-handed 310
Helix 19
19
A
360 365Right-handed alpha
Helix 20
20
B
19 29Right-handed alpha
Helix 21
21
B
40 44Right-handed 310
Helix 22
22
B
46 52Right-handed alpha
Helix 23
23
B
60 66Right-handed alpha
Helix 24
24
B
79 83Right-handed 310
Helix 25
25
B
101 104Right-handed 310
Helix 26
26
B
105 115Right-handed alpha
Helix 27
27
B
123 125Right-handed 310
Helix 28
28
B
128 134Right-handed 310
Helix 29
29
B
135 156Right-handed alpha
Helix 30
30
B
181 194Right-handed alpha
Helix 31
31
B
206 213Right-handed alpha
Helix 32
32
B
246 248Right-handed 310
Helix 33
33
B
249 256Right-handed alpha
Helix 34
34
B
277 282Right-handed alpha
Helix 35
35
B
294 298Right-handed 310
Helix 36
36
B
322 326Right-handed 310
Helix 37
37
B
327 344Right-handed alpha
Helix 38
38
B
360 366Right-handed alpha
Helix 39
39
C
35 45Right-handed alpha
Helix 40
40
C
54 60Right-handed alpha
Helix 41
41
C
62 72Right-handed alpha
Helix 42
42
C
93 102Right-handed alpha
Helix 43
43
C
112 116Right-handed alpha
Helix 44
44
C
135 139Right-handed 310
Helix 45
45
C
190 201Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 1PTJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
32 36parallel
Strand 3
A
2 5parallel
Strand 4
A
70 75parallel
Strand 5
A
95 99parallel
Strand 6
A
118 121parallel
Strand 7
A
367 370anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
168 170anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
197 201parallel
Strand 3
A
174 178parallel
Strand 4
A
260 263parallel
Strand 5
A
289 292parallel
Strand 6
A
315 318parallel
Strand 7
A
310 312anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
2 5parallel
Strand 3
B
70 75parallel
Strand 4
B
95 99parallel
Strand 5
B
118 121parallel
Strand 6
B
367 369anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
168 170anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 218first strand
Strand 2
B
197 201parallel
Strand 3
B
174 178parallel
Strand 4
B
260 263parallel
Strand 5
B
289 292parallel
Strand 6
B
315 319parallel
Strand 7
B
308 312anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 348first strand
Strand 2
B
353 354anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 111first strand
Strand 2
C
79 84parallel
Strand 3
C
48 51parallel
Strand 4
C
124 126parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 161first strand
Strand 2
C
184 185parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il