Analysis of interatomic Contacts of Structural Units in PDB entry:
1PTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PTM entry

There are 2 chains in PDB entry 1PTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLN 329
B
 VAL 2GLN 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1PTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 26Right-handed alpha
Helix 2
2
A
39 50Right-handed alpha
Helix 3
3
A
92 110Right-handed alpha
Helix 4
4
A
122 129Right-handed alpha
Helix 5
5
A
135 144Right-handed alpha
Helix 6
6
A
168 170Right-handed 310
Helix 7
7
A
171 176Right-handed alpha
Helix 8
8
A
177 195Right-handed alpha
Helix 9
9
A
209 217Right-handed 310
Helix 10
10
A
220 225Right-handed alpha
Helix 11
11
A
225 236Right-handed alpha
Helix 12
12
A
245 250Right-handed alpha
Helix 13
13
A
251 256Right-handed alpha
Helix 14
14
A
265 275Right-handed alpha
Helix 15
15
A
300 304Right-handed 310
Helix 16
16
A
311 329Right-handed alpha
Helix 17
17
B
17 26Right-handed alpha
Helix 18
18
B
39 51Right-handed alpha
Helix 19
19
B
90 92Right-handed 310
Helix 20
20
B
93 110Right-handed alpha
Helix 21
21
B
122 129Right-handed alpha
Helix 22
22
B
135 144Right-handed alpha
Helix 23
23
B
168 170Right-handed 310
Helix 24
24
B
171 176Right-handed alpha
Helix 25
25
B
177 195Right-handed alpha
Helix 26
26
B
209 214Right-handed 310
Helix 27
27
B
220 225Right-handed alpha
Helix 28
28
B
225 235Right-handed alpha
Helix 29
29
B
245 250Right-handed alpha
Helix 30
30
B
251 256Right-handed alpha
Helix 31
31
B
265 277Right-handed alpha
Helix 32
32
B
311 327Right-handed alpha
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There are 2 sheets in PDB entry 1PTM. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
72 77parallel
Strand 3
A
33 38parallel
Strand 4
A
6 10parallel
Strand 5
A
115 118parallel
Strand 6
A
291 294parallel
Strand 7
A
282 286anti-parallel
Strand 8
A
150 154anti-parallel
Strand 9
A
159 162anti-parallel
Strand 10
A
260 263parallel
Strand 11
A
202 206parallel
Strand 12
A
239 244parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
72 77parallel
Strand 3
B
33 38parallel
Strand 4
B
6 10parallel
Strand 5
B
115 118parallel
Strand 6
B
291 294parallel
Strand 7
B
282 286anti-parallel
Strand 8
B
150 154anti-parallel
Strand 9
B
159 162anti-parallel
Strand 10
B
260 263parallel
Strand 11
B
202 206parallel
Strand 12
B
239 244parallel
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