Analysis of interatomic Contacts of Structural Units in PDB entry:
1PV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PV1 entry

There are 4 chains in PDB entry 1PV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 299
B
 MET 1ILE 299
C
 MET 1ILE 299
D
 MET 1ILE 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 1PV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 69Right-handed alpha
Helix 2
2
A
70 79Right-handed alpha
Helix 3
3
A
116 121Right-handed alpha
Helix 4
4
A
124 131Right-handed alpha
Helix 5
5
A
131 142Right-handed alpha
Helix 6
6
A
161 174Right-handed alpha
Helix 7
7
A
175 178Right-handed 310
Helix 8
8
A
195 206Right-handed alpha
Helix 9
9
A
213 216Right-handed 310
Helix 10
10
A
217 222Right-handed alpha
Helix 11
11
A
223 225Right-handed 310
Helix 12
12
A
250 258Right-handed alpha
Helix 13
13
A
277 296Right-handed alpha
Helix 14
14
B
62 69Right-handed alpha
Helix 15
15
B
70 79Right-handed alpha
Helix 16
16
B
124 131Right-handed alpha
Helix 17
17
B
131 142Right-handed alpha
Helix 18
18
B
161 174Right-handed alpha
Helix 19
19
B
175 178Right-handed 310
Helix 20
20
B
195 206Right-handed alpha
Helix 21
21
B
217 222Right-handed alpha
Helix 22
22
B
223 225Right-handed 310
Helix 23
23
B
250 258Right-handed alpha
Helix 24
24
B
277 296Right-handed alpha
Helix 25
25
C
44 49Right-handed 310
Helix 26
26
C
62 69Right-handed alpha
Helix 27
27
C
70 79Right-handed alpha
Helix 28
28
C
116 121Right-handed alpha
Helix 29
29
C
124 131Right-handed alpha
Helix 30
30
C
131 142Right-handed alpha
Helix 31
31
C
161 174Right-handed alpha
Helix 32
32
C
195 205Right-handed alpha
Helix 33
33
C
217 222Right-handed alpha
Helix 34
34
C
243 248Right-handed alpha
Helix 35
35
C
250 257Right-handed alpha
Helix 36
36
C
277 296Right-handed alpha
Helix 37
37
D
62 69Right-handed alpha
Helix 38
38
D
70 79Right-handed alpha
Helix 39
39
D
116 121Right-handed alpha
Helix 40
40
D
124 131Right-handed alpha
Helix 41
41
D
131 142Right-handed alpha
Helix 42
42
D
161 174Right-handed alpha
Helix 43
43
D
175 178Right-handed 310
Helix 44
44
D
195 206Right-handed alpha
Helix 45
45
D
217 222Right-handed alpha
Helix 46
46
D
250 256Right-handed alpha
Helix 47
47
D
277 297Right-handed alpha
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There are 4 sheets in PDB entry 1PV1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 9first strand
Strand 2
A
12 20anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
81 84anti-parallel
Strand 5
A
51 55parallel
Strand 6
A
155 160parallel
Strand 7
A
182 186parallel
Strand 8
A
233 236parallel
Strand 9
A
266 269parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 9first strand
Strand 2
B
12 21anti-parallel
Strand 3
B
26 34anti-parallel
Strand 4
B
81 85anti-parallel
Strand 5
B
51 55parallel
Strand 6
B
155 159parallel
Strand 7
B
182 186parallel
Strand 8
B
233 236parallel
Strand 9
B
266 269parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 9first strand
Strand 2
C
12 20anti-parallel
Strand 3
C
27 34anti-parallel
Strand 4
C
81 85anti-parallel
Strand 5
C
51 55parallel
Strand 6
C
155 160parallel
Strand 7
C
182 186parallel
Strand 8
C
233 236parallel
Strand 9
C
266 269parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 9first strand
Strand 2
D
12 20anti-parallel
Strand 3
D
27 34anti-parallel
Strand 4
D
81 85anti-parallel
Strand 5
D
51 55parallel
Strand 6
D
155 159parallel
Strand 7
D
182 185parallel
Strand 8
D
233 236parallel
Strand 9
D
266 269parallel
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